F26926

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26926

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26926

Determination of introduced cDNA(s)

  • RAFL09-34-O09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-O09 - Resource: pda06082

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-34-O09 - full reading
    ATGAACAAAA CAAACCCAGA AAGAAAAATA TCACTAACCT CATTCAAAGA 
    GAGAATGGCT TGTAAAGAAA AGCCTCGTGA TCTTCAAGTT CTTTTGATCA
    TATCTATAGT TTTGAGTTGT TCTTTTGCTG TTTCTGCAAC GGTGGAAGAA
    GCTAATGCTC TTTTGAAATG GAAGTCAACT TTCACAAACC AGACAAGTTC
    ATCAAAGCTA TCTTCTTGGG TCAATCCAAA CACAAGCAGC TTTTGTACCA
    GTTGGTATGG TGTTGCCTGC TCACTCGGGA GCATTATACG GTTGAATCTT
    ACTAATACCG GTATCGAAGG TACTTTCGAA GATTTTCCAT TCTCGTCTCT
    CCCCAATCTC ACTTTTGTTG ATCTCAGTAT GAACCGTTTC TCTGGAACCA
    TCTCTCCTTT ATGGGGACGG TTCTCGAAAC TCGAATACTT CGATTTGTCG
    ATTAACCAGT TAGTTGGTGA AATCCCACCT GAACTTGGTG ATTTGAGTAA
    TTTAGATACT CTCCATCTAG TTGAAAACAA GTTAAACGGA TCGATTCCTT
    CTGAGATCGG TCGGTTAACT AAGGTTACGG AGATAGCTAT ATACGACAAT
    CTTTTAACCG GACCAATACC TTCTTCTTTT GGAAACCTTA CCAAACTAGT
    TAACCTCTAC CTCTTTATCA ATTCTCTTTC TGGTTCAATT CCTTCTGAAA
    TAGGAAACTT ACCCAACCTT AGAGAGCTAT GTCTAGATAG GAACAACCTT
    ACCGGTAAAA TCCCTTCTAG TTTCGGGAAT TTGAAGAATG TAACTCTTCT
    CAATATGTTT GAAAATCAGC TCTCTGGTGA AATCCCTCCT GAGATTGGTA
    ATATGACCGC TTTAGATACA CTTAGTCTCC ACACAAATAA GCTTACCGGT
    CCAATACCTT CTACCTTAGG AAACATCAAA ACCCTAGCCG TTCTTCATCT
    TTACCTGAAT CAACTCAATG GTTCGATTCC ACCGGAACTA GGCGAAATGG
    AATCAATGAT TGATTTGGAG ATAAGTGAGA ACAAACTCAC CGGTCCTGTT
    CCCGATTCTT TTGGCAAGTT AACCGCGTTG GAATGGTTGT TCCTACGTGA
    TAATCAGCTC TCTGGTCCCA TCCCACCGGG AATTGCTAAC TCTACAGAGC
    TCACCGTCCT GCAGCTCGAC ACCAACAACT TCACCGGTTT CTTGCCTGAT
    ACCATCTGTA GAGGTGGAAA GCTTGAGAAT CTTACGCTAG ATGATAATCA
    CTTCGAAGGT CCTGTTCCTA AAAGCTTGAG AGATTGCAAG AGCTTGATCA
    GAGTAAGATT CAAAGGGAAT AGTTTCTCCG GAGATATCTC TGAGGCTTTC
    GGAGTTTACC CGACTCTCAA CTTCATCGAT CTCAGCAACA ACAACTTTCA
    TGGACAACTT TCAGCCAACT GGGAACAAAG TCAAAAGCTG GTTGCATTCA
    TCCTCTCAAA CAACAGCATC ACTGGAGCCA TCCCACCTGA GATTTGGAAC
    ATGACACAGC TAAGTCAGCT CGATCTATCT TCCAACCGCA TCACCGGCGA
    GCTACCTGAA TCAATCAGCA ATATCAACCG TATATCAAAA CTCCAACTCA
    ACGGGAATCG GCTATCAGGC AAAATCCCTT CAGGAATCAG ACTCTTAACC
    AATCTTGAGT ATCTTGATCT ATCCTCAAAC CGATTCAGTT CCGAAATACC
    CCCAACGCTC AACAATTTGC CAAGGCTCTA CTACATGAAC CTGAGCAGAA
    ACGACTTGGA TCAAACCATC CCGGAGGGGT TAACAAAGCT ATCTCAGTTA
    CAAATGCTTG ATCTCAGCTA CAATCAGCTC GACGGAGAGA TCTCATCACA
    ATTCAGATCT TTACAAAACC TCGAAAGACT CGACCTCTCA CACAACAATC
    TCTCAGGTCA AATCCCACCA AGTTTCAAAG ATATGCTAGC ACTAACACAC
    GTCGATGTAT CACACAACAA CCTCCAAGGT CCAATTCCAG ATAACGCAGC
    GTTTCGAAAC GCACCTCCAG ATGCTTTTGA AGGTAACAAA GACTTATGTG
    GTAGTGTTAA CACCACACAA GGCTTGAAGC CATGTTCAAT CACATCCTCA
    AAGAAATCAC ACAAGGATCG AAACCTAATC ATCTACATAC TAGTTCCGAT
    CATCGGAGCA ATCATAATCC TCTCCGTCTG CGCCGGAATC TTCATCTGTT
    TCCGTAAACG AACAAAACAA ATCGAGGAGC ATACAGATTC AGAATCAGGA
    GGAGAAACAT TATCAATCTT CAGCTTCGAC GGCAAAGTCC GATACCAAGA
    GATCATCAAA GCAACAGGAG AATTCGATCC AAAATACCTA ATCGGAACCG
    GAGGACACGG CAAAGTCTAC AAAGCAAAGC TACCAAACGC AATCATGGCG
    GTGAAAAAGC TAAACGAAAC AACAGACTCA TCAATCTCAA ATCCATCAAC
    AAAACAAGAG TTTCTCAACG AAATCAGAGC ACTAACCGAG ATCCGTCACC
    GGAACGTCGT GAAACTCTTC GGATTCTGCT CGCATCGCCG CAACACGTTT
    CTGGTTTACG AGTACATGGA GAGAGGAAGC TTGAGGAAAG TTTTGGAGAA
    TGATGATGAA GCGAAGAAGT TAGATTGGGG AAAGAGGATC AACGTTGTGA
    AAGGTGTGGC TCATGCTTTG TCTTATATGC ATCATGATCG GTCTCCGGCG
    ATTGTTCACC GTGATATTAG TAGTGGGAAT ATTCTTCTCG GCGAGGATTA
    TGAAGCGAAG ATCTCTGATT TTGGTACTGC GAAGCTTCTT AAACCGGATT
    CTTCAAATTG GTCCGCCGTT GCTGGTACTT ACGGCTATGT TGCTCCAGAA
    CTAGCTTATG CGATGAAAGT GACTGAGAAA TGCGATGTGT ATAGCTTTGG
    AGTTCTAACA CTTGAAGTGA TCAAAGGAGA GCATCCAGGA GATCTAGTTT
    CAACTCTTTC ATCCTCACCT CCCGATGCAA CTCTGTCACT GAAAAGCATT
    TCCGACCACC GGCTACCGGA ACCGACACCG GAGATTAAAG AGGAGGTCTT
    AGAGATTTTG AAAGTTGCAC TTTTGTGTTT ACATTCTGAT CCACAAGCTC
    GCCCAACAAT GCTCTCTATC TCCACTGCCT TTTCTTAAGA ACTTGTCTCT
    TCTCTGACTC TCTCTAGTCT CTACCAAGCA GAAACTTTAC ACGTTGTAGT
    GTTTGTTTCT TTGATTATGG GTTAATATTT TTGTTTCATG GAATTTTAGT
    TTTTGTGATG AATTATATAA TAGTTTGCAT CTTTTGTATA TATAATGTTT
    CTTTCTTTAA TTTTTCTCAC TAATAGATAC AAAAAATATG TC

    Gene models with high sequence identity

    1. AT4G08850.1 [+] show detail - Leucine-rich repeat receptor-like protein kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 1.7e-73
    superfamily RNI-like 2.4e-67
    superfamily L domain-like 9.6e-61
    HMMSmart no description 380
    HMMSmart Leucine-rich repeat, typical subtype 36
    HMMSmart no description 250
    HMMSmart no description 670
    HMMSmart Leucine-rich repeat, typical subtype 20
    HMMSmart Leucine-rich repeat, typical subtype 280
    HMMSmart no description 770
    HMMSmart Leucine-rich repeat, typical subtype 36
    HMMSmart no description 2.1
    HMMSmart Leucine-rich repeat, typical subtype 38
    HMMSmart no description 80
    HMMSmart Leucine-rich repeat, typical subtype 1.3
    HMMSmart no description 15
    HMMSmart Leucine-rich repeat, typical subtype 26
    HMMSmart Leucine-rich repeat, typical subtype 6.5
    HMMSmart Leucine-rich repeat, typical subtype 170
    HMMSmart Serine/threonine-protein kinase domain 1.2e-40
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.5e-25
    HMMPanther RECEPTOR PROTEIN KINASE 0
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 0
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Tyrosine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 4.2e-48
    HMMPfam Leucine-rich repeat 0.013
    HMMPfam Leucine-rich repeat 0.16
    HMMPfam Leucine-rich repeat 0.0051
    HMMPfam Leucine-rich repeat 0.63
    HMMPfam Leucine-rich repeat 0.00038
    HMMPfam Leucine-rich repeat 0.8
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.000000036
    FPrintScan Toll-like receptor, leucine rich repeat-containing 0.0000099
    FPrintScan Toll-like receptor, leucine rich repeat-containing 0.0000099
    ProfileScan Protein kinase, catalytic domain 37.531
    Gene3D no description 1.5e-48
    Gene3D no description 4.1e-43
    Gene3D no description 4.3e-64
    Gene3D no description 3.9e-19
    Gene3D no description 1.1e-42

    See the detailed result >

    AT4G08850.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat receptor-like protein kinase family protein
    Computational Description
    Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT1G35710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR