F26926

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26926

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26926

Determination of introduced cDNA(s)

  • RAFL09-34-O09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-O09 - Resource: pda06082

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-34-O09 - full reading 
    ATGAACAAAA CAAACCCAGA AAGAAAAATA TCACTAACCT CATTCAAAGA 
    GAGAATGGCT TGTAAAGAAA AGCCTCGTGA TCTTCAAGTT CTTTTGATCA 
    TATCTATAGT TTTGAGTTGT TCTTTTGCTG TTTCTGCAAC GGTGGAAGAA 
    GCTAATGCTC TTTTGAAATG GAAGTCAACT TTCACAAACC AGACAAGTTC 
    ATCAAAGCTA TCTTCTTGGG TCAATCCAAA CACAAGCAGC TTTTGTACCA 
    GTTGGTATGG TGTTGCCTGC TCACTCGGGA GCATTATACG GTTGAATCTT 
    ACTAATACCG GTATCGAAGG TACTTTCGAA GATTTTCCAT TCTCGTCTCT 
    CCCCAATCTC ACTTTTGTTG ATCTCAGTAT GAACCGTTTC TCTGGAACCA 
    TCTCTCCTTT ATGGGGACGG TTCTCGAAAC TCGAATACTT CGATTTGTCG 
    ATTAACCAGT TAGTTGGTGA AATCCCACCT GAACTTGGTG ATTTGAGTAA 
    TTTAGATACT CTCCATCTAG TTGAAAACAA GTTAAACGGA TCGATTCCTT 
    CTGAGATCGG TCGGTTAACT AAGGTTACGG AGATAGCTAT ATACGACAAT 
    CTTTTAACCG GACCAATACC TTCTTCTTTT GGAAACCTTA CCAAACTAGT 
    TAACCTCTAC CTCTTTATCA ATTCTCTTTC TGGTTCAATT CCTTCTGAAA 
    TAGGAAACTT ACCCAACCTT AGAGAGCTAT GTCTAGATAG GAACAACCTT 
    ACCGGTAAAA TCCCTTCTAG TTTCGGGAAT TTGAAGAATG TAACTCTTCT 
    CAATATGTTT GAAAATCAGC TCTCTGGTGA AATCCCTCCT GAGATTGGTA 
    ATATGACCGC TTTAGATACA CTTAGTCTCC ACACAAATAA GCTTACCGGT 
    CCAATACCTT CTACCTTAGG AAACATCAAA ACCCTAGCCG TTCTTCATCT 
    TTACCTGAAT CAACTCAATG GTTCGATTCC ACCGGAACTA GGCGAAATGG 
    AATCAATGAT TGATTTGGAG ATAAGTGAGA ACAAACTCAC CGGTCCTGTT 
    CCCGATTCTT TTGGCAAGTT AACCGCGTTG GAATGGTTGT TCCTACGTGA 
    TAATCAGCTC TCTGGTCCCA TCCCACCGGG AATTGCTAAC TCTACAGAGC 
    TCACCGTCCT GCAGCTCGAC ACCAACAACT TCACCGGTTT CTTGCCTGAT 
    ACCATCTGTA GAGGTGGAAA GCTTGAGAAT CTTACGCTAG ATGATAATCA 
    CTTCGAAGGT CCTGTTCCTA AAAGCTTGAG AGATTGCAAG AGCTTGATCA 
    GAGTAAGATT CAAAGGGAAT AGTTTCTCCG GAGATATCTC TGAGGCTTTC 
    GGAGTTTACC CGACTCTCAA CTTCATCGAT CTCAGCAACA ACAACTTTCA 
    TGGACAACTT TCAGCCAACT GGGAACAAAG TCAAAAGCTG GTTGCATTCA 
    TCCTCTCAAA CAACAGCATC ACTGGAGCCA TCCCACCTGA GATTTGGAAC 
    ATGACACAGC TAAGTCAGCT CGATCTATCT TCCAACCGCA TCACCGGCGA 
    GCTACCTGAA TCAATCAGCA ATATCAACCG TATATCAAAA CTCCAACTCA 
    ACGGGAATCG GCTATCAGGC AAAATCCCTT CAGGAATCAG ACTCTTAACC 
    AATCTTGAGT ATCTTGATCT ATCCTCAAAC CGATTCAGTT CCGAAATACC 
    CCCAACGCTC AACAATTTGC CAAGGCTCTA CTACATGAAC CTGAGCAGAA 
    ACGACTTGGA TCAAACCATC CCGGAGGGGT TAACAAAGCT ATCTCAGTTA 
    CAAATGCTTG ATCTCAGCTA CAATCAGCTC GACGGAGAGA TCTCATCACA 
    ATTCAGATCT TTACAAAACC TCGAAAGACT CGACCTCTCA CACAACAATC 
    TCTCAGGTCA AATCCCACCA AGTTTCAAAG ATATGCTAGC ACTAACACAC 
    GTCGATGTAT CACACAACAA CCTCCAAGGT CCAATTCCAG ATAACGCAGC 
    GTTTCGAAAC GCACCTCCAG ATGCTTTTGA AGGTAACAAA GACTTATGTG 
    GTAGTGTTAA CACCACACAA GGCTTGAAGC CATGTTCAAT CACATCCTCA 
    AAGAAATCAC ACAAGGATCG AAACCTAATC ATCTACATAC TAGTTCCGAT 
    CATCGGAGCA ATCATAATCC TCTCCGTCTG CGCCGGAATC TTCATCTGTT 
    TCCGTAAACG AACAAAACAA ATCGAGGAGC ATACAGATTC AGAATCAGGA 
    GGAGAAACAT TATCAATCTT CAGCTTCGAC GGCAAAGTCC GATACCAAGA 
    GATCATCAAA GCAACAGGAG AATTCGATCC AAAATACCTA ATCGGAACCG 
    GAGGACACGG CAAAGTCTAC AAAGCAAAGC TACCAAACGC AATCATGGCG 
    GTGAAAAAGC TAAACGAAAC AACAGACTCA TCAATCTCAA ATCCATCAAC 
    AAAACAAGAG TTTCTCAACG AAATCAGAGC ACTAACCGAG ATCCGTCACC 
    GGAACGTCGT GAAACTCTTC GGATTCTGCT CGCATCGCCG CAACACGTTT 
    CTGGTTTACG AGTACATGGA GAGAGGAAGC TTGAGGAAAG TTTTGGAGAA 
    TGATGATGAA GCGAAGAAGT TAGATTGGGG AAAGAGGATC AACGTTGTGA 
    AAGGTGTGGC TCATGCTTTG TCTTATATGC ATCATGATCG GTCTCCGGCG 
    ATTGTTCACC GTGATATTAG TAGTGGGAAT ATTCTTCTCG GCGAGGATTA 
    TGAAGCGAAG ATCTCTGATT TTGGTACTGC GAAGCTTCTT AAACCGGATT 
    CTTCAAATTG GTCCGCCGTT GCTGGTACTT ACGGCTATGT TGCTCCAGAA 
    CTAGCTTATG CGATGAAAGT GACTGAGAAA TGCGATGTGT ATAGCTTTGG 
    AGTTCTAACA CTTGAAGTGA TCAAAGGAGA GCATCCAGGA GATCTAGTTT 
    CAACTCTTTC ATCCTCACCT CCCGATGCAA CTCTGTCACT GAAAAGCATT 
    TCCGACCACC GGCTACCGGA ACCGACACCG GAGATTAAAG AGGAGGTCTT 
    AGAGATTTTG AAAGTTGCAC TTTTGTGTTT ACATTCTGAT CCACAAGCTC 
    GCCCAACAAT GCTCTCTATC TCCACTGCCT TTTCTTAAGA ACTTGTCTCT 
    TCTCTGACTC TCTCTAGTCT CTACCAAGCA GAAACTTTAC ACGTTGTAGT 
    GTTTGTTTCT TTGATTATGG GTTAATATTT TTGTTTCATG GAATTTTAGT 
    TTTTGTGATG AATTATATAA TAGTTTGCAT CTTTTGTATA TATAATGTTT 
    CTTTCTTTAA TTTTTCTCAC TAATAGATAC AAAAAATATG TC

    Gene models with high sequence identity

    1. AT4G08850.1 [+] show detail - Leucine-rich repeat receptor-like protein kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 1.7e-73
    superfamily RNI-like 2.4e-67
    superfamily L domain-like 9.6e-61
    HMMSmart no description 380
    HMMSmart Leucine-rich repeat, typical subtype 36
    HMMSmart no description 250
    HMMSmart no description 670
    HMMSmart Leucine-rich repeat, typical subtype 20
    HMMSmart Leucine-rich repeat, typical subtype 280
    HMMSmart no description 770
    HMMSmart Leucine-rich repeat, typical subtype 36
    HMMSmart no description 2.1
    HMMSmart Leucine-rich repeat, typical subtype 38
    HMMSmart no description 80
    HMMSmart Leucine-rich repeat, typical subtype 1.3
    HMMSmart no description 15
    HMMSmart Leucine-rich repeat, typical subtype 26
    HMMSmart Leucine-rich repeat, typical subtype 6.5
    HMMSmart Leucine-rich repeat, typical subtype 170
    HMMSmart Serine/threonine-protein kinase domain 1.2e-40
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.5e-25
    HMMPanther RECEPTOR PROTEIN KINASE 0
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 0
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Tyrosine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 4.2e-48
    HMMPfam Leucine-rich repeat 0.013
    HMMPfam Leucine-rich repeat 0.16
    HMMPfam Leucine-rich repeat 0.0051
    HMMPfam Leucine-rich repeat 0.63
    HMMPfam Leucine-rich repeat 0.00038
    HMMPfam Leucine-rich repeat 0.8
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 3.6e-08
    FPrintScan Toll-like receptor, leucine rich repeat-containing 9.9e-06
    FPrintScan Toll-like receptor, leucine rich repeat-containing 9.9e-06
    ProfileScan Protein kinase, catalytic domain 37.531
    Gene3D no description 1.5e-48
    Gene3D no description 4.1e-43
    Gene3D no description 4.3e-64
    Gene3D no description 3.9e-19
    Gene3D no description 1.1e-42

    See the detailed result >

    AT4G08850.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat receptor-like protein kinase family protein
    Computational Description
    Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT1G35710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR