F26943

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26943

Determination of introduced cDNA(s)

  • RAFL06-89-E03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E03 - Resource: pda07785

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-E03 - full reading
    ACTTCCTTCG TTCTTTTCCT TACCAAAAGA TCCACCTCGA ACCTCTCTCC 
    TCCGTCTTCC TCCGCAGCCG CCGTCACTAT CACCGCAGCT AGAATGAGAG
    AAGATAATCC AAATTGGTTC CTTAGATGGG AAGAAGAGCT TCCATCTCCA
    GAAGAACTCA TCCCTATCTC TCAAACCTTA ATCACTCCTC ATCTAGCTCT
    CGCTTTCCAA ATCGGAAGTC CTAATCATCA TCTCGGATCA AAGAGAACCA
    CCGCGATTTA TCACCAGAAG CTTCAATCCT CCACCACTCC AACAACTCCA
    ACTCCAACTC CTCCACCGAT GATGATGAAT TCTGATTTCG GCGGTGGCGA
    TTCCACGGAT CTTGGTTCAG GATCAATAGG AGGAGAGCCA GCAAGAACGT
    TGAAACGGCC GCGTCTAGTG TGGACGCCTC AGCTACACAA ACGTTTCGTG
    GATGCGGTTG GACACTTAGG GATCAAAAAC GCAGTTCCAA AGACTATAAT
    GCAGCTTATG AGCGTTGAAG GATTGACTAG AGAGAACGTT GCGAGTCATC
    TTCAGAAATA TCGTCTTTAC CTTAGGAGAA TGCAAGGCGG GAACGGTAAC
    GGAATCACTG GAGGACACGT CATCGTCTCT GATTCGGCTA CTGATCGGCT
    ATTTGCTAGC TCACCGGTTC CAGCTCATTT CTTGAGCCCG GATTACTTGA
    TGCCGCCATT AGAGCATTCG TATATGGGGA AACATGTGAT TACGCAGCAA
    AACCAAGTGG TTCGTAATCT GAGGTATGAA GATTCGGAAT ATGGTCATGG
    TAGTATGAAG ATGCTTAAGC TCTTCCCTGC CGGAAATTAA TGAAATATTT
    GAATTCTTAA CTTCATTTTT ATGGAAGTAA TAATGTTTAA GGTATGTGGA
    TTATCTCTGT AATTTGCATT TGTCGTCAGG ATCAATAAT

    Gene models with high sequence identity

    1. AT2G40970.1 [+] show detail - Homeodomain-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 1.2e-20
    HMMPfam Myb, DNA-binding 0.0000000000016
    Gene3D Homeodomain-related 2.4e-23
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 9.19
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 5.8e-28

    See the detailed result >

    AT2G40970.1

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Computational Description
    MYBC1; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10760.1); Has 1641 Blast hits to 1639 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1614; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR