F26948

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26948

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26948

Determination of introduced cDNA(s)

  • RAFL08-13-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-13-L08 - Resource: pda04782

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-13-L08 - full reading 
    GGGTGCGCTC TTTGTGGCGG CTCGTCTTCT TCTTCTTCTT CCACGGGACT 
    CTCTCTGAAT CGGTGATTTT CGATCTTCCT AGGGTTTCGA TCTGAAACCT 
    TGCGATCTAC TTGAAAGAGA GATTCAGAAA TTTCCAAGTA ATAATAATGT 
    TTGCGCCTGC GACTCAACCG CAACAGCAAC ATGAGCAGAA GAAGCAATCA 
    GAGACTGTTT CATCTGCTGA AGAAGATGCT TTGAAGTGGA ACACCGATTG 
    CGTTTACTTT CTCGCTTCTC CTTTAACCTG CAAGAAGGGA CCTGAATGCG 
    AGTATCGCCA CAGTGAGTAT GCGCGTATGA ACCCGAGGGA TTGCTATTAT 
    TGGTTGAATG GAAACTGTTT GAATCCCAAA TGTGGATTTC GGCATCCTCC 
    TTTGGAGGGA TTGTTGGGAA ATCAAGGAGG TGCTCCTGCT GTTTCTGTAC 
    AGCCAATACA TGCAACCGCG CAGCATCCTA GTGTTGCAAA ACAGCCTGTT 
    CCATGTCTGT TCTTTCAAAA AGGCATGTGT ATGAAAGGAG ATATGTGTTC 
    GTTCTTGCAC ACGCCGAATC CTGCTGCGTA TAAAAAACAG CATCCTGTAG 
    AAGCTAAGCC TGCTACTGAT CCTCAGTGTT CTAAAAAGCC AATTGAAAAT 
    AACACTGAGG AGAAGAAACT TCCTGATGTT AATCTCTCAA AGGTGGTTAA 
    AGGACATACT GACATATCGG CTGCACCAAG AGTCGCTTCT ACTGGACTAA 
    GGGATAGTAG AAGTGTAGAG GGATACATTC CAAACCATGT GGGATATGAG 
    CCTGTTGTGC AGAGAAAGGG TCCAGGATTC CCTTCTTTTA CTGAAGGAGG 
    CCATTCTACT CAGTTGCTTC AGAAATATGG ATCTGATGAT AATAACAGTT 
    TCCACAATGG TAAGGATGCA GATGACGTTT TAAGAGAGTC GTCTCCTGGG 
    TTTGATGTTC TTGTGGATAA TGAGGCTGGA GATTCTGAGT ATTATCATGT 
    TGAAGATCGA TATGGACGTA GAAGTCAGGA GAGAGGGAAC TCAGAGTATG 
    ACCCTGATTT CAGTGCAATT GCTGATGGTG ATAAAGAAGC ATTACGTGAA 
    CAACGTTTTG ATTCATATGA TCGGAGGGAA GACAGGGGAT GGGGCCATCG 
    TCGAGTTTCT TCTGAGAGAG AGGATCGTTT GGACAGAAGG GTTTACGCAG 
    AAGATGAGAG ATCAGAGAAC ATACTGGAAT CGGATCTGAG ATATCGTTTG 
    GCTAAGCAGA GAAAAGGCAA TGGTATGAGA TTATCAGTAG GAGGCCATGA 
    CTATGCTGCT CCTGACTCTT CGATGGACAG AGGATATAGA GAGTCTCGTA 
    GGGATACACC GAGGGAAAAC TCCATTAGCA GTAGTCGTCT TCAGGGTAGA 
    ATTAAGCTTC GTGAGAGAAG CAATGGCGAA GAGGGTCACC ACTTTGACAG 
    GAGAAGTGAG AGGGGAAGGG ACAGAAGCGA GTTACCTTCT CAGGGTAGAC 
    TCCGAGATAG AATTAAGAGT AGGTTAGAGG AAAACCATAG TGGTAATCAG 
    GAAAGAGGTT TCGGGGCTCC ATGGGCGAGA AGAAGAGAAA TGGAAGACGA 
    AAGAAAATCA GCTCCTAAAA GCAGCAGAGA GGAAAGTAAG CCAGAGCCAT 
    CTCTTGGGAA GAGGAAAAGC TTTGAAGAGG ATCATCATAG TCATAAGCGA 
    TCAAGGGATT CATTTGCAGC TCCATTGCCT TTCAGTGAGA TTCTCAAGAG 
    AAAAAAAGCG GCCGCATCTG GTGGTAGCAG AAACAACAAC AAGGACGAGA 
    CGATATCGAA AGAGGAAGCT GGAGATGAGA TCAAACTCAT AACCGAAGAG 
    AAAACCGAGG TTGTCTCTGA ACCCAAAGCT GAAGTAGAAG AAGAAGGAAC 
    GGTTATGGAG GAAGAAGAAA TTGTTGGGGA GGAAGTGTAT GAAGGAAATG 
    AAGACGAGCA AGCTTATGAA GGCGATGAGC TAAACGGAGA GTACTATTAC 
    GAAGAAGGAT ATGAAGAAGA GGGAGGAGAA TACGCTTACG AAGAAGGTGA 
    AGAAGTAGTT TACGCGGCTG AGGAAGGAGA AGAAGAAGCA ACAGAAGGAG 
    GTGAAGGTGA GGGTGAAGAA GACATTGAGA AGAAGACCGT TGAGATGTTG 
    TCATAAAAGA AGAAAGAGTA ACACAGAAAA AAGCTTTTGC TCCTTTCCTC 
    TCTCTCTCTC TCTCTGCTTA ATGCAAATGG AGAGAAGAAG TCGTAGAGCA 
    AATAATACGA GTCGCTTTTA TCTTTGGCTT GGCACTGAGT TTTAGTCGCC 
    ATTTTTTCTT ACTGTGATTT CTTAAATTGT AACACTAGAG AAGAAAGAAA 
    AGAAACAATG GTACAAGTAC ACCATATCAT ATTTCTGAGT TTTACTGTTT 
    TCTAATCTGT TTTGATATAT TACTTTTTCC TCAAATTAAA AAGTATTTAC 
    AGTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT2G02160.1 [+] show detail - CCCH-type zinc finger family protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, CCCH-type 9.798
    ProfileScan Zinc finger, CCCH-type 10.803
    ProfileScan Zinc finger, CCCH-type 14.23
    HMMSmart Zinc finger, CCCH-type 0.00067
    HMMSmart Zinc finger, CCCH-type 0.052
    HMMSmart Zinc finger, CCCH-type 0.00027

    See the detailed result >

    AT2G02160.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger family protein
    Computational Description
    CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR