F27023

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F27023

Determination of introduced cDNA(s)

  • RAFL05-17-B11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-B11 - Resource: pda02711

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-B11 - full reading
    ACATCCATCA CTTATAACTA AAAACACAAA TCAAGATAAA ATGGCGGAAG 
    AGCAAGCAGC GACGGCAATG GAAACATCGG CGGTGGAGAA GCAGCCAGAG
    ACGACGACAG AGGCTGAAGC ACCAAGTTTG ACGACGAAGA GGATGGTGGT
    TGCGATTGAT GAGAGCGACT CGAGCTTCTA CGCTCTCCAA TGGGTCATTG
    ACCATTTCTC TAATCTTTTA TTGACCACAG CGGCAGCTGA GGCGGAAAGT
    GGAATGCTCA CGGTGATTCA TGTGCAGTCC CCTTTCAATC ACTTTGCTGC
    CTTTCCGGCT GGACCGGGCG GCGCCACAGC AGTGTACGCA TCTTCATCAA
    TGATAGAGTC AGTGAAAAAG GCACAACAAG AGACCTCTGC TGCCCTTCTC
    TCTCGCGCTC TCCAAATGTG CCGAGCCAAG CAGATACGTA CTGAAACTCT
    AGTGCTAGAA GGCGAGGCGA AGGAGATGAT TTGTGAGGCG GTGGAGAAAA
    TGCACGTTGA TCTTCTCGTT GTGGGTAGTC GTGGCCTTGG CAAGATCAAA
    AGAGCGTTTC TTGGGAGCGT TAGCGATTAC TGCGCTCATC ACGCCAACTG
    CCCCATCCTT ATTGTCAAGC CACCTAAGGA GATGACTAAG TAATATGGAG
    CTGTTTACAT GTTTGGGTTA TTAGTACGAA TTTTATAATG AGTGTGCCAT
    AATTTACCTA AAAAAT

    Gene models with high sequence identity

    1. AT3G11930.2 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Universal stress protein A 1.7e-16
    FPrintScan Universal stress protein A 1.7e-16
    FPrintScan Universal stress protein A 1.7e-16
    superfamily Adenine nucleotide alpha hydrolases-like 1.6e-30
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.4e-29
    HMMPfam UspA 3.4e-32

    See the detailed result >

    AT3G11930.2

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Computational Description
    Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G58450.1); Has 5467 Blast hits to 5289 proteins in 1122 species: Archae - 381; Bacteria - 3940; Metazoa - 138; Fungi - 108; Plants - 754; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR