F27108

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27108

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27108

Determination of introduced cDNA(s)

  • RAFL05-14-L02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-L02 - Resource: pda02607

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-L02 - full reading 
    GCAACCATTT CTCTGCTGTT TCTTCGTCGT TTAGCTTCAG AGGACGACAA 
    TCCGGTAGGC GAGAGAGAGA GATTAATCAA TCGGCGACCT TTTTAATTCG 
    CTCGTAATTC GTTTTGATTT TCGTGTTTTT GCAACGAATT TAACAACTTC 
    TGTGTGTGTG GGTGTGAGTT TCTTAAGAGA AGTCAGAAAC AATGATTGGG 
    TTGTTTAAAG TAAAGGAAAA GCAAAGAGAA CAAGCTCAAA ATGCTACTAG 
    AGGAGGAGCT TCTGTTAAGA AGCAATCTGC TGGCGAACTT CGTCTTCACA 
    AAGATATATC AGAGTTGAAC CTTCCTAGCT CTTGTTCAAT ATCTTTTCCA 
    AATGGCAAAG ATGATTTGAT GAACTTTGAA GTATCCATTA AACCTGATGA 
    TGGATATTAC CACAATGGTA CGTTTGTTTT CACATTCCAA GTCTCTCCTG 
    TGTATCCACA TGAAGCTCCA AAAGTTAAAT GCAAAACCAA GGTTTATCAT 
    CCCAATATCG ATTTGGAAGG AAACGTTTGC CTGAACATCT TGCGTGAAGA 
    TTGGAAACCT GTTCTTAACA TTAACACAGT TATCTACGGA CTCTTCCATC 
    TGTTCACGGA ACCCAATTCT GAAGATCCCT TGAACCATGA TGCTGCAGCA 
    GTTTTGAGGG ATAACCCAAA GCTCTTTGAG ACCAATGTTC GCAGGGCCAT 
    GACCGGTGGA TATGTCGGTC AGACCTTTTT CCCGCGTTGT ATCTAACAAA 
    GCTCTGGTTT GTCTTCTTCA AGGAAAAAGA TAAGAACCAA ACCCTTTGTC 
    CGCCATTGTA TTTCTTCTCT TTCTCAAGGA CCCTCGTTTG TTTGTTTGAT 
    CTTGTAAAAT TACATTCCGC GTTAAAGTAA CCCTTTCCTT ATATCC

    Gene models with high sequence identity

    1. AT4G36800.1 [+] show detail - RUB1 conjugating enzyme 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ubiquitin-conjugating enzyme, E2 2e-35
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 7.6e-40
    ProfileScan Ubiquitin-conjugating enzyme, E2 28.163
    HMMPfam Ubiquitin-conjugating enzyme, E2 1.5e-37
    superfamily Ubiquitin-conjugating enzyme/RWD-like 1.2e-44
    HMMPanther RUB1 conjugating enzyme Ubc12 4.7e-110
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 4.7e-110
    PatternScan Ubiquitin-conjugating enzyme, E2 0

    See the detailed result >

    AT4G36800.1

    Model type
    Protein coding
    Short Description
    RUB1 conjugating enzyme 1
    Curator Summary
    RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
    Computational Description
    RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR