F27134

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27134

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27134

Determination of introduced cDNA(s)

  • RAFL04-12-F21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-12-F21 - Resource: pda00450

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-12-F21 - full reading 
    AACACTGGTC GAAAGAAGAC GAACATAAAC TCGTCTCCGG TAACCAAAAA 
    TGGTTTCCAT GACTACTTCA TCTTCTTCGT ACGGAACATT CTCTACAGTC 
    GTCAACAGTT CTAGACCTAA TTCCTCAGCA ACCTTTCTCG TCCCTTCCTT 
    GAAATTCTCC ACCGGAATAT CGAATTTCGC GAATCTGAGT AATGGGTTTT 
    CTCTAAAATC TCCAATTAAT CCTGGGTTTC TCTTCAAGTC TCGTCCTTTC 
    ACTGTCCAAG CTAGAGCTGC TGCAGAAAAA ACCGTTCACG ATTTCACCGT 
    TAAGGACATT GATGGGAAGG ATGTTGCTTT GAACAAATTC AAGGGGAAAG 
    TTATGTTGAT TGTCAATGTT GCTTCAAGAT GTGGTTTGAC ATCATCAAAT 
    TACTCAGAGC TTTCACATCT GTACGAGAAA TACAAAACTC AAGGATTTGA 
    GATTCTAGCT TTTCCCTGCA ATCAGTTTGG TTTCCAAGAG CCCGGGTCAA 
    ACTCCGAGAT CAAACAATTC GCTTGCACCC GGTTTAAAGC AGAGTTCCCT 
    ATATTTGATA AGGTTGACGT GAATGGACCA AGCACAGCGC CGATCTACGA 
    GTTCTTGAAA TCAAACGCAG GAGGATTCTT GGGTGGTCTC ATTAAATGGA 
    ACTTTGAGAA GTTCTTGATT GATAAAAAGG GAAAGGTCGT TGAGAGGTAC 
    CCTCCCACCA CATCCCCTTT CCAAATCGAG AAAGACATCC AGAAGTTGCT 
    TGCCGCTTAA AAACTTTTGC TCATGAGTGA GCATATAGAG ACTGATGGTT 
    AAAGTAACCG TAAATTGTGA CATAAAGTTT CCGGTTATTG CTTGTATACC 
    TTCTTACATT CTAAGTTGTA CTAATCGCTT AATAATTTGC GTATAATGGT 
    AATGTTATAT ACATTATATT AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT2G25080.1 [+] show detail - glutathione peroxidase 1
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Glutathione peroxidase 4.7e-96
    superfamily Thioredoxin-like fold 2.4e-62
    ProfileScan Glutathione peroxidase 73.466
    PatternScan Glutathione peroxidase 0
    PatternScan Glutathione peroxidase 0
    Gene3D Thioredoxin fold 4.2e-66
    FPrintScan Glutathione peroxidase 1.9e-21
    FPrintScan Glutathione peroxidase 1.9e-21
    FPrintScan Glutathione peroxidase 1.9e-21
    HMMPfam Glutathione peroxidase 7.2e-45

    See the detailed result >

    AT2G25080.1

    Model type
    Protein coding
    Short Description
    glutathione peroxidase 1
    Curator Summary
    Encodes glutathione peroxidase.
    Computational Description
    glutathione peroxidase 1 (GPX1); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 7 (TAIR:AT4G31870.1); Has 7896 Blast hits to 7895 proteins in 1765 species: Archae - 2; Bacteria - 4003; Metazoa - 799; Fungi - 210; Plants - 390; Viruses - 8; Other Eukaryotes - 2484 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR