F27145

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27145

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27145

Determination of introduced cDNA(s)

  • RAFL04-17-B14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-B14 - Resource: pda00637

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-B14 - full reading
    ACGACCACAG CCTTTAGCTT ATTTGTGTGG CGAAGAGAAG AGATAACATT 
    CCTAAGCAAA TCTCTTCTCT CTCCCATTCG TCTCCAAAGA GATTACAGTT
    TTGAGCATTT CTCATCTCTC GAAGCTCTTC TCTGTGTGTG TGGCGATGGC
    TGCTAATTCG ATAATGGCTT CCTCCAAACC CCTAATCTCC CTGTCATCCA
    ACCAACAACC AAACCGAGTC CAAATTCCCA AATTCGCCAA ACTTCCCCAA
    ATTCCCAAAT CCCTCACTTC CTCCACCGAT CTCCGTAGCA AAGCACTATC
    ACTCTCCTCC GCCACCGCCA AATCCTTAGC TTTAATCGCC GCTTTCGCTC
    CTCCGTCGAT GGCGGAGGCG ATGGAGAAAG CACAGCTCTT CGATTTCAAT
    CTCACGCTTC CGATCATCGT TGTTGAGTTT CTCTTCTTGA TGTTCGCTCT
    CGACAAGGTC TATTACTCTC AGCTTGGTAA CTTCATGGAT CAAAGAGACG
    CTTCCATCAA AGAGAAGCTC GCGAGTGTTA AGGACACTTC GACTGAAGTA
    AAGGAGCTCG ATGAGCAAGC CGCCGCCGTG ATGAGAGCAG CTAGGGCTGA
    GATCGCCGCC GCGCTTAACA AGATGAAGAA GGAGACTCAG GTTGAAGTCG
    AGGAGAAGCT AGCGGAGGGA AGGAAGAAGG TGGAGGAAGA GCTAAAAGAA
    GCTTTGGCGA GCTTGGAGAG TCAGAAAGAA GAAACCATTA AAGCTTTGGA
    TTCTCAGATT GCTGCTCTTA GTGAAGACAT TGTCAAGAAG GTTCTTCCTT
    CTTAAATTAT ATTTTTGTTA ACTGTGTAAT TCTCTGTCTC TCTATCTCAA
    AACTTATTTA CAAGAAATTA CTGTAAATCT CTTCTTCTTC TTCTTCTCTG
    TTTCTTGGAT TGTTCGTCGT TCAAAGAAGA ACAATTTTTA TTTTGTAAGT
    TTATAAATAA TTAGCTCTCT TCTGT

    Gene models with high sequence identity

    1. AT4G32260.1 [+] show detail - ATPase, F0 complex, subunit B/B', bacterial/chloroplast
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATPase, F0 complex, subunit B/B', bacterial/chloroplast 9.6e-30
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT4G32260.1

    Model type
    Protein coding
    Short Description
    ATPase, F0 complex, subunit B/B', bacterial/chloroplast
    Computational Description
    ATPase, F0 complex, subunit B/B', bacterial/chloroplast; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit B/B', bacterial/chloroplast (InterPro:IPR002146); Has 2587 Blast hits to 2581 proteins in 935 species: Archae - 6; Bacteria - 1820; Metazoa - 10; Fungi - 8; Plants - 73; Viruses - 1; Other Eukaryotes - 669 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR