F27148

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27148

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27148

Determination of introduced cDNA(s)

  • RAFL04-12-M19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-12-M19 - Resource: pda07148

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-12-M19 - full reading 
    AAGCTTCCCT CTCTCTTCGA GTCGGTTCTT AATCTCCGGG ATAAAATGGC 
    GACCGAGGAC GTGAAGCTGA TCGGCTCATG GGCGAGTGTT TACGTCATGA 
    GGGCGAGGAT CGCTCTCCAC CTCAAATCTA TTAGCTACGA ATTCCTTCAG 
    GAGACGTATG GTTCAAAGAG CGAATTGCTC CTCAAATCAA ACCCGGTTCA 
    CAAGAAGATG CCGGTTCTGA TTCACGCTGA CAAACCGGTG TGCGAGTCCA 
    ACATCATCGT TCATTATATC GACGAGGCTT GGAACTCTTC TGGACCTTCC 
    ATTCTCCCGT CCCATCCATA CGACCGGGCC ATTGCTCGGT TTTGGGCTGC 
    CTACATAGAC GATCAGGTTC ATAGATTGTT CTTCACTTGC TCTTTTCACT 
    TTGATTGCAT GTAATAAAGT ATACCGGGAA TTAATGAGGG ATTGATTTGG 
    TTTTGATTGC TTTAATTTTG ATACATCCCC AAAACTTTAG CGGTTCTTTT 
    ATGATTGTTA TTGGTTTAAT CCGGTTAGTA ATCTAGAATA ACACGATATG 
    ACCGATTTAA ACCGGATAGG GTTTGACTAT AGTCCAGCTT CGACTAACTT 
    TAATTTCTAG TTTATACGGA TAGTTAGGTA ATTAGTCAAC TTTTATGTTG 
    AAAGAAATTA GACATTTTGT TTATCTTCCT TACTATATAT GACATAATCA 
    AGTAAATCTT AAATCTTATA TGTTCTGACT TAAATTTGAT ATGAATGGAA 
    GTGGTTTATC TCTGTGAGAA GTATCCTAAC AGCTCAAGGA GACGAAGAGA 
    AGAAAGCAGC CATAGCTCAA GTTGAAGAAA GGACCAAGCT TCTGGAGAAA 
    GCATTCAACG ATTGTAGCCA AGGAAAACCG TTCTTCAACG GTGACCATAT 
    CGGTTACCTC GACATTGCCT TGGGGAGCTT CTTAGGTTGG TGGAGAGTCG 
    TCGAGTTGGA TGCCAATCAT AAATTTCTTG ATGAGACCAA AACTCCCTCT 
    CTAGTCAAAT GGGCAGAGCG GTTCTGTGAT GATCCCGCTG TGAAACCTAT 
    AATGCCCGAG ATTACAAAGC TCGCTGAATT CGCAAGGAAG CTCTTTCCTA 
    AGCGGCAAGC ATAAACTGGA TTACTAGGAT GTAAGTTATA TAATAAGCAC 
    AGCCAAATAT TTTTTTTATG TCTTTTGCAT ATTCGTTCAT AATCTTGGAG 
    TTATGAAAAT ATTGTAATCC ATATTACCTC AGATCAAATT TTACATGAGT 
    GTACCAAACA TATAAACATT GATTATCGAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT1G10360.1 [+] show detail - glutathione S-transferase TAU 18
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutathione S-transferase, N-terminal 3.3e-11
    HMMPfam Glutathione S-transferase, C-terminal 3.3e-08
    HMMPanther GLUTATHIONE S-TRANSFERASE 1.6e-39
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 1.6e-39
    HMMPanther GLUTATHIONE S-TRANSFERASE 6.1e-68
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 6.1e-68
    Gene3D Thioredoxin fold 3e-24
    Gene3D Glutathione S-transferase, C-terminal-like 1.7e-27
    ProfileScan Glutathione S-transferase, N-terminal 19.692
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 13.625
    superfamily Thioredoxin-like fold 2.8e-20
    superfamily Glutathione S-transferase, C-terminal-like 1.6e-08
    superfamily Glutathione S-transferase, C-terminal-like 5e-28

    See the detailed result >

    AT1G10360.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase TAU 18
    Curator Summary
    Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase TAU 18 (GSTU18); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT1G10370.1); Has 5056 Blast hits to 5041 proteins in 1030 species: Archae - 0; Bacteria - 2429; Metazoa - 208; Fungi - 116; Plants - 1907; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR