F27203

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Seed::deep red
Seed::light blue

Original: F27203

Determination of introduced cDNA(s)

RAFL06-72-J05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-72-J05 - Resource: pda17231

full reading [+] show sequence

GAGAGATAGA TTCTTATATA CTACTGAGAA TCTTCAATTT CTGCAACTTT 
TGTATCTCTT CCTGATGGAG TCTTCAAGTC CCCACCATAG TCACATTGTT 
GAGGTTAATG TTGGAAAATC TGATGAAGAG AGAATAATTG TGGCGAGTAA 
AGTCTGTGGA GAAGCACCAT GTGGGTTTTC AGATTCTAAG AATGCTTCCG 
GGGATGCTCA CGAACGCTCT GCTTCTATGC GGAAGCTTTG TATCGCCGTC 
GTGCTGTGTC TAGTGTTCAT GAGTGTTGAA GTTGTTGGTG GGATTAAAGC 
CAATAGTTTA GCTATATTAA CCGATGCAGC TCATTTGCTC TCTGACGTTG 
CTGCCTTTGC TATCTCCCTC TTCTCATTGT GGGCTGCTGG CTGGGAAGCG 
ACTCCTAGGC AGACTTACGG GTTCTTCAGG ATTGAGATTT TGGGTGCTCT 
TGTATCTATC CAGCTCATTT GGTTGCTCAC GGGTATTCTG GTTTATGAAG 
CGATTATCAG AATTGTTACA GAGACCAGTG AGGTTAATGG ATTCCTCATG 
TTTCTGGTTG CTGCCTTTGG TCTAGTGGTG AACATCATAA TGGCTGTTCT 
GCTAGGGCAT GATCATGGTC ACAGTCATGG ACATGGGCAT GGCCACGGCC 
ATGACCATCA CAATCATAGC CATGGGGTGA CTGTTACCAC TCATCACCAT 
CATCACGATC ATGAACATGG CCATAGTCAT GGTCATGGAG AGGACAAGCA 
TCATGCTCAT GGGGATGTTA CTGAGCAATT GTTGGACAAA TCGAAGACTC 
AAGTCGCAGC AAAAGAGAAA AGAAAGAGAA ACATCAATCT CCAAGGAGCT 
TATCTGCATG TCCTTGGGGA TTCCATCCAG AGTGTTGGTG TTATGATTGG 
AGGAGCTATC ATTTGGTACA ATCCGGAATG GAAGATAGTG GATCTGATCT 
GCACACTTGC CTTTTCGGTT ATTGTCCTAG GAACAACCAT CAACATGATT 
CGCAACATTC TAGAAGTATT GATGGAGAGT ACACCCAGAG AGATTGACGC 
CACAAAGCTC GAAAAGGGTT TGCTCGAAAT GGAAGAAGTG GTGGCTGTTC 
ATGAGCTCCA CATATGGGCT ATCACAGTGG GAAAAGTGCT ATTGGCTTGC 
CATGTCAATA TCAGACCAGA AGCAGATGCA GATATGGTGC TCAACAAGGT 
AATTGATTAC ATCCGCAGGG AGTACAACAT TAGTCATGTC ACGATACAAA 
TCGAGCGCTA AAAGCTAAGT AAGATCTGAT GAAGGGTTTT TGTATCAGCA 
TTCTCATTAA CAATAAAATC AATAAAGTTT CTACATTTTT CAAAAAAAAA 
A

Gene models with high sequence identity

AT2G46800.1 [+] show detail - zinc transporter of Arabidopsis thaliana
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPanther	Cation efflux protein	1e-106
HMMPfam	Cation efflux protein	6.9e-63
HMMTigr	Cation efflux protein	5.5e-85

See the detailed result >

AT2G46800.1

Model type: Protein coding
Short Description: zinc transporter of Arabidopsis thaliana
Curator Summary: Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.
Computational Description: zinc transporter of Arabidopsis thaliana (ZAT); FUNCTIONS IN: zinc ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular zinc ion homeostasis, zinc ion transport, response to metal ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: metal tolerance protein A2 (TAIR:AT3G58810.1); Has 17776 Blast hits to 10611 proteins in 2227 species: Archae - 165; Bacteria - 10659; Metazoa - 2900; Fungi - 835; Plants - 528; Viruses - 26; Other Eukaryotes - 2663 (source: NCBI BLink).
Link: InterPro Scan - TAIR