F27218

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27218

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27218

Determination of introduced cDNA(s)

RAFL06-69-L03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-L03 - Resource: pda03328

full reading [+] show sequence

AACATCAATC TCACAGGAAG GAAAGAAAGA AAGAAAGACG AGCCCTTTTT 
TCTTTCTAAA AATAGAAATA TGTCTCTAAA AGCCATTCAT GTCTCGGAAG 
TGCCAAGCCT CGACCACTTC CCTGAGAACC CGTCGCTCAT TTGCTCCTCT 
CGCAAAGCGA ATAACAAGTT TGTGGTGGTT GGCCATAGAG GACACGGCAT 
GAACATGTCG CAGTCGCCGG ATCTAAGGTT CTCTGCTCTC AAGGAGAACT 
CCATCCTCTC CTTTAATGCC GCTTCAAAAT TCCCTCTCGA CTTTATCGAA 
TTCGATGTTC AGGTCACCAG AGATGGCTGC CCAATCATAT TCCACGACGA 
CTTCATCTAC TCCGAGGAAC AGGGAGTGGT GTACGAGAAG AGGGTCACGG 
AGGTTTGCTT GTCGGAGTTC ATGTCCTACG GGCCACAGAG GGATACAGGC 
AAGACAGGAA AGCCTTTGCT GAGAAAGTCA AAGGAAGGGA AGATCCATAA 
GTGGAGCGTC GCAACCGACG ACTCTTTCTG TACTCTCCAA GAGGCTTTTG 
AGAAAGTAGA GAATCCAAAC CTCGGTTTCA ACATCGAACT CAAGCTTGAC 
GACAACGTCT TCTATTCCTC CGATCACCTC TCCCGTCTTC TCCTCCCAAT 
CTTGCAGGTC GTGTCTGATA TCGGAAACGA CAGAACTATC ATCTTCTCCA 
GCTTCCATCC TGATGCAGCC CTTCTTGTCA GGAAGTTGCA GACCACCTAC 
CCCGTATTCT TCTTGACCAA CGGAGGAACT GAGATGTACC ACGACACGAG 
AAGGAATTCG CTTGAGGAAG CAATCAAAGT ATGTTTAGAA GGAGGCCTCC 
AAGGGATTGT CTCGGAGGTG AAGGGAGTAT TCCGCAACCC CGCTCTTGTC 
AACAAGATAA AAGAATCCAA GCTCTCTCTG ATGACATACG GAAAGCTAAA 
CAATGTAGCC GAGGCGGTTT ACATGCAGCA TTTGATGGGG ATAGAGGGAG 
TGATAGTTGA TCATGTGGAG GAGATAACAG AGGCGGTGAG GGAGATGATG 
AAGCCATCCA ACAGAGATGC TGATGGTACT AAGCCAAAGC CTAACTTCTC 
TGACAGAGAG CTCTCCTTTC TTCTCAAGCT CATTCCCGAG TTGATACAAC 
ACTAAAACTA TCTCTTTTAG TTAGGATCTC TAGTTTCCCA AAATGTGATA 
GTGTTTTGTA TCGGGAAAAT TTGACAATGT GGGTGCTGCT ATCATGATTC 
ATGAGGTGAA AGCCCAAATG TTATGGAATA TATCTGTTTG CAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

AT3G02040.1 [+] show detail - senescence-related gene 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	9.6e-33
HMMPanther	RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT K	3.1e-94
superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	1.3e-37
HMMPfam	Glycerophosphoryl diester phosphodiesterase	1.7e-60

See the detailed result >

AT3G02040.1

Model type: Protein coding
Short Description: senescence-related gene 3
Computational Description: senescence-related gene 3 (SRG3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT5G41080.1); Has 1727 Blast hits to 1696 proteins in 532 species: Archae - 28; Bacteria - 1003; Metazoa - 245; Fungi - 173; Plants - 101; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
Link: InterPro Scan - TAIR