F27230

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27230

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27230

Determination of introduced cDNA(s)

  • RAFL07-15-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-15-D24 - Resource: pda04293

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-15-D24 - full reading 
    GGTAGTATCA GACAGATCGA AAATCGCAAC GGTTAAGATT CCAGCTACTG 
    AAATCTATCA ACGTCGAAGA AGTGAACGAT GGGGAAGAAA CAACACAGCA 
    AAGATCGGAT GTTCATAACG AAGACGGAGT GGGCAACAGA ATGGGGAGGC 
    GCTAAATCCA AAGAGAATCG AACTCCTTTC AAGAGTCTTC CTTACTATTG 
    CTGCGCGCTT ACGTTTTTGC CATTCGAAGA TCCTGTGTGT ACAATCGACG 
    GGAGTGTTTT CGAGATAACA ACAATAGTGC CTTACATTAG GAAATTTGGA 
    AAACATCATG TTACTGGAGC TCCATTGAAA GGAGAAGATC TAATTCCTCT 
    CATCTTTCAC AAGAACTCTG AAGGAGAGTA TCATTGTCCT GTTCTAAACA 
    AAGTCTTCAC TGAATTTACA CATATTGTTG CTGTCAAGAC TACTGGAAAT 
    GTATTCTGCT ACGAGGCAAT CAAAGAGTTG AATATCAAAA CCAAGAATTG 
    GAAGGAGCTT TTAACTGAAG AACCATTTAC AAGAGCCGAC CTTATAACAA 
    TTCAGAATCC TAATGCAGTT GATGGTAAAG TGACGGTGGA GTTTGATCAT 
    GTTAAAAACG GTCTTAAGAT CGATGATGAA GAGTTGAAAA AGATGAACTC 
    AGACCCTGCT TATAATATAA ACGTGTCTGG AGATATCAAG CACATGCTTG 
    CAGATCTTGG AACTGATAAA GCTAAAGAGA TTGCTTTACA TGGTGGAGGT 
    GGAAACAAGG CACGTAATGA AAGAGCCGCT GCTATTGCTG CGATTCTGGA 
    GTCAAGATCG AAAATCAAAG AGGTTTCTAA AGCAGAACAA CCGAAACAGA 
    CCTACAGTGT TGTTGATGCT GCATCTGCTT CGGTTTTTGG AAGAAGTGCT 
    GATGCAGCTA AAGCTGGTTC TAGTGATAAA ACAGCTGCAA GAATAGCTAT 
    GCATATGGCT GGAGATAGAA CACCTGTTAA TTCTAAAATG GTGAAGAGCC 
    GTTATTCGTC GGGTGCTGCT TCTCGTTCTT TCACTTCCTC TGCCTTTACT 
    CCTGTAACCA AAAACGATTT TGAACTAATT AAAGTCGAGA AAAACCCGAA 
    AAAGAAAGGG TATGTTCAGT TTCAGACAAC ACATGGCGAT TTGAACATTG 
    AGCTCCATTG CGATATAGCT CCTAGAGCAT GTGAGAATTT CATCACTCTC 
    TGTGAACGTG GTTACTACAA TGGAGTGGCC TTTCACAGAA GTATCAGGAA 
    CTTCATGATT CAAGGGGGCG ATCCAACTGG CACAGGAAAA GGAGGTGAAT 
    CCATTTGGGG GAAGCCATTC AAAGACGAGC CAAACTCGAA GCTGCTTCAC 
    TCAGGAAGAG GCGTAGTTAG TATGGCTAAT AGTGGACCTC ACACAAATGG 
    TTCTCAGTTT TTCGTCTTAT ACAAATCAGC GACCCATTTA AACTACAAGC 
    ACACAGTGTT TGGTGGAGTT GTTGGTGGTT TGGCAACACT AGCAGCAATG 
    GAGAATGTAC CTGTAGATGA AAGCGACCGT CCTCTTGAAG AGATTAAGAT 
    AATCGAGGCA AGTGTGTTTG TGAATCCATA CACGGAGCTT GATGAAGAGG 
    AAGAGAAAGA GAAAGCTGAG AAAGAGAAGA ATGAAGACAA AGACATTGAG 
    AAGATCGGGT CGTGGTACAG CAACCCGGGA TCAGGAACAA CAGAAGCTGG 
    AGCGGGTGGC GGTGGTGTCG GAAAATACTT GAAAGCTATG AGTAGTACAG 
    CCACTAAAGA CACTAAAGGT TCCCTAGACT CAGATATTTC AACCATTGGA 
    GTGTCTAAGA AAAGAAAAAC TACTGCGTCA GCCTCCACAG GGTTTAAAGA 
    TTTCTCTAGC TGGTAATTGA AAACATTCTC TACCTACTTT GTAAAACCGT 
    TGACTAGTTT TGATAGAGAC CAAGTCACAA AAGCATTTGT ATGACAACAC 
    TGAGCCTTTG ATGTCCAAAA TCTGGAGCTG TGTAATAAAG TTGACTAGTT 
    TTGATGG

    Gene models with high sequence identity

    1. AT5G67530.1 [+] show detail - plant U-box 49
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    superfamily Cyclophilin-like 7.5e-61
    superfamily RING/U-box 2.8e-12
    superfamily RING/U-box 0.0025
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7e-46
    HMMPanther CYCLOPHILIN-10 4.6e-129
    HMMPanther CYCLOPHILIN 4.6e-129
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4e-55
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 32.354
    Coil coiled-coil 0
    HMMSmart U box domain 6.7e-08

    See the detailed result >

    AT5G67530.1

    Model type
    Protein coding
    Short Description
    plant U-box 49
    Computational Description
    plant U-box 49 (PUB49); FUNCTIONS IN: ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), U box domain (InterPro:IPR003613), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G01940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR