F27240

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27240

Determination of introduced cDNA(s)

RAFL05-07-L13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-L13 - Resource: pda01173

full reading [+] show sequence

AAAGAGTTCT CCTACAATTT TCCTAAATTC TTGGATTTGA GATTTCACTT 
TTTCCGATTT GAAACAATGA TGATAACTCG CGGTGGAGCC AAGGCGGCGA 
AATCGCTGTT AGTGGCGGCT GGACCACGTT TGTTCTCGAC GGTCCGTACG 
GTTTCGTCTC ACGAGGCTTT ATCAGCAAGC CATATTTTGA AGCCTGGTGT 
TACATCTGCT TGGATATGGA CTAGAGCTCC GACGATTGGA GGTATGAGAT 
TCGCTAGCAC GATCACTCTG GGAGAGAAAA CTCCGATGAA GGAGGAGGAC 
GCGAATCAGA AGAAAACAGA GAACGAATCC ACCGGTGGAG ACGCCGCCGG 
AGGTAATAAC AAGGGAGATA AAGGAATCGC GAGCTATTGG GGTGTTGAAC 
CTAATAAGAT TACTAAAGAA GATGGTTCTG AATGGAAGTG GAACTGTTTC 
AGGCCATGGG AAACGTATAA AGCTGATATA ACGATAGATC TGAAGAAGCA 
TCATGTTCCA ACGACGTTTC TTGATAGAAT AGCTTATTGG ACTGTTAAAT 
CTCTTCGTTG GCCTACCGAT TTGTTCTTCC AGAGGAGATA TGGATGTCGA 
GCTATGATGC TTGAAACTGT AGCAGCAGTA CCTGGAATGG TTGGAGGAAT 
GTTACTACAC TGCAAATCGC TTCGACGTTT TGAGCAAAGT GGAGGATGGA 
TTAAGGCTCT TCTTGAGGAA GCAGAGAATG AGAGAATGCA TCTTATGACA 
TTCATGGAAG TCGCGAAACC GAAATGGTAC GAGAGAGCGC TCGTGATCAC 
TGTGCAAGGA GTCTTCTTCA ACGCTTATTT CCTTGGTTAC TTAATCTCTC 
CCAAGTTTGC TCATCGTATG GTTGGGTACC TTGAAGAAGA AGCGATCCAT 
TCTTATACTG AGTTTCTCAA GGAACTTGAC AAAGGTAACA TTGAGAATGT 
TCCTGCTCCG GCTATTGCTA TTGATTACTG GAGGCTTCCT GCTGATGCGA 
CACTTCGTGA TGTTGTGATG GTTGTTCGTG CTGACGAGGC TCATCACCGT 
GATGTAAACC ATTTTGCATC TGATATTCAC TACCAAGGTC GTGAACTAAA 
GGAAGCTCCA GCTCCAATTG GGTATCATTG ATTCGATTAA AAGAAGAGCT 
TTTTCTCAAG TTTAAAACTT TGTTCTAAAG AATTTAAGTT CTTTGACTTG 
TATATACATC ATCACCTCTG CTTAAGCCAT ACTTGGATTC GGCTTTCTTT 
GAATGTTGCT ACGAATGTTC TGATTTCTTC TTTACTTTTC CTGTCAATGG 
GCTTTTGGGC TTATCTTTTG CTATTGTATG GCCTTGCTAT TTAGAATGAG 
AGTAATAGTT TGTAAAAAAA AAAAAAAAA

Gene models with high sequence identity

AT3G22370.1 [+] show detail - alternative oxidase 1A
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Alternative oxidase	2.5e-87
HMMPIR	Alternative oxidase	5.7e-157

See the detailed result >

AT3G22370.1

Model type: Protein coding
Short Description: alternative oxidase 1A
Curator Summary: Encodes AOX1a, an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. AOX1a also functions as a marker for mitochondrial retrograde response.
Computational Description: alternative oxidase 1A (AOX1A); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, cellular respiration, response to cold, response to stress, mitochondria-nucleus signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: alternative oxidase 1B (TAIR:AT3G22360.1); Has 1299 Blast hits to 1299 proteins in 245 species: Archae - 0; Bacteria - 109; Metazoa - 12; Fungi - 194; Plants - 380; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).
Link: InterPro Scan - TAIR