F27247

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27247

Determination of introduced cDNA(s)

RAFL06-82-N05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-N05 - Resource: pda07713

full reading [+] show sequence

GGTGAGTGAA GACCATCAAA AATTGCAGAA AATAGGCTTA ATCTGAATCT 
CTTCTCCTCC GTCGAAGTTT TGAATTCTCT CTGGTTCTCC AATTCTCCTC 
TCGAGCTGCC TTAAGCTTCG CATTTACGTT TACGTTATGC ACGAATGAGA 
TCATCGTAGA TCGTGATTGA AGAAGCGAGA GATAAATTAG GAGAGCGAAG 
ATGAGCGAGG GCCAGAAGTT CCAGTTGGGA ACAATCGGCG CTTTGAGTTT 
GTCCGTTGTG TCATCTGTCT CGATTGTGAT CTGTAACAAA GCGCTTATTA 
GCACCCTTGG CTTCACATTC GCGACTACTT TGACAAGTTG GCATCTTTTG 
GTCACATTTT GTTCCCTTCA TGTGGCATTA TGGATGAAGA TGTTCGAACA 
CAAGCCTTTT GATCCACGAG CTGTGATGGG ATTTGGCATA TTGAATGGGA 
TATCCATAGG ACTATTGAAC CTCAGCCTGG GCTTTAATTC TGTCGGTTTT 
TACCAGATGA CTAAACTAGC TATCATCCCC TGCACTGTTC TCTTGGAGAC 
CCTCTTCTTC AGGAAAAAGT TCAGTCGAAA AATCCAGTTT TCATTAACCA 
TCCTTCTCCT TGGTGTTGGA ATTGCAACCG TCACAGATCT TCAACTTAAT 
ATGCTGGGTT CTGTCTTGTC GCTGCTGGCT GTTGTCACAA CTTGTGTTGC 
TCAAATTATG ACAAATACCA TCCAGAAGAA GTTCAAAGTT TCATCCACGC 
AGCTTCTGTA TCAGTCTTGC CCATATCAAG CAATCACTCT TTTCGTCACT 
GGGCCATTTT TAGATGGGCT CCTAACCAAT CAGAACGTGT TTGCTTTCAA 
GTACACTTCT CAAGTAGTGT TCTTCATCGT CCTGTCTTGC CTCATATCAG 
TCTCTGTAAA CTTCAGCACA TTTCTTGTCA TTGGAAAAAC ATCTCCTGTC 
ACATATCAGG TTCTAGGACA TCTCAAAACA TGCCTGGTTC TAGCATTTGG 
CTATGTGTTG CTGCGAGACC CATTCGACTG GCGCAACATT CTCGGTATTC 
TAGTGGCTGT GATTGGAATG GTTGTTTATT CCTATTACTG CTCGATTGAG 
ACTCAGCAGA AGGCAAGTGA AACCTCAACT CAGTTGCCTC AGATGAAAGA 
GAGCGAGAAG GATCCGCTAA TAGCAGCTGA AAATGGAAGC GGAGTGTTAT 
CAGATGGCGG CGGGGGAGTG CAGCAAAAGA CGGTGGCTCC TGTATGGAAC 
TCAAATAAAG ATTTTCAAGC CTAAAAGCTT TGATCATCGC TATTTTTTTA 
TATAATATCA AACTCTCTTT GTATTGTCCC CAAAAAAACA CAAACTTTTT 
AATTTCTCTT TTTTTTTTTT TTTTTTGTTC CCTTTTTAAA TATGCATAGC 
AGAGAAGTAG GGGAGACTGA AAAATCAACA AACCTTCCAC ACAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

AT1G06890.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
E-value: 0; Score: 99.79

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SOLUTE CARRIER FAMILY 35	1.2e-95
HMMPfam	Protein of unknown function DUF250	4e-33
superfamily	Multidrug resistance efflux transporter EmrE	2.5e-06
superfamily	Multidrug resistance efflux transporter EmrE	1e-05

See the detailed result >

AT1G06890.1

Model type: Protein coding
Short Description: nodulin MtN21 /EamA-like transporter family protein
Computational Description: nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Link: InterPro Scan - TAIR