F27250

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27250

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27250

Determination of introduced cDNA(s)

  • RAFL09-46-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-46-I18 - Resource: pda06284

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-46-I18 - full reading 
    GCACTCTATA TCAAACATTT CTTTTAAAAA TGAGAAAGTT GTTGGCATCG 
    CCGTTTAGTT CATTACTCGC CGTCGTTTTC ATTTCCGTCA TCTCCGTCGT 
    CAGATGCTGC TCTCCTAAAG ATCAGACGGC TCTCAATGCT TTCAAGTCGT 
    CACTGAGCGA ACCAAACCTC GGTATCTTCA ACACTTGGTC TGAAAACACT 
    GATTGTTGCA AGGAATGGTA CGGTATCAGC TGCGATCCTG ATTCGGGTCG 
    GGTCACTGAT ATTTCTCTCC GGGGAGAATC TGAAGACGCC ATTTTCCAAA 
    AGGCAGGCCG GTCCGGTTAT ATGTCCGGTT CGATTGATCC AGCAGTTTGT 
    GACTTAACCG CACTCACTTC CCTCGTTCTC GCCGACTGGA AAGGAATCAC 
    CGGAGAGATT CCTCCGTGCA TTACTTCCCT AGCTTCGCTC CGTATCCTCG 
    ATCTCGCCGG CAACAAGATC ACCGGGGAGA TTCCCGCGGA AATCGGCAAA 
    CTCTCGAAAC TCGCTGTTTT AAACCTCGCC GAGAATCAAA TGTCCGGCGA 
    GATTCCGGCG TCACTGACGT CACTCATCGA GTTGAAGCAT CTTGAATTGA 
    CGGAAAATGG AATCACCGGC GTGATCCCGG CCGATTTCGG ATCGTTGAAG 
    ATGTTGAGCA GAGTTTTACT GGGCCGTAAC GAACTAACCG GGTCAATTCC 
    AGAGTCGATC TCGGGTATGG AACGGTTAGC GGATCTGGAT CTATCCAAAA 
    ACCATATCGA AGGTCCGATA CCCGAATGGA TGGGTAACAT GAAGGTACTC 
    TCACTTTTGA ATCTCGATTG CAATTCGTTA ACCGGTCCAA TCCCCGGTTC 
    GCTTCTTAGC AATTCCGGTT TAGATGTTGC CAATTTGAGC CGAAATGCGT 
    TGGAAGGAAC TATACCCGAC GTTTTCGGGT CAAAAACGTA TTTAGTTTCG 
    CTTGATCTGT CACACAATAG TCTATCGGGT CGGATCCCGG ATTCGTTGTC 
    GTCAGCTAAG TTTGTGGGAC ATTTGGATAT TAGCCATAAC AAGCTTTGTG 
    GGCGTATTCC AACGGGTTTT CCTTTTGATC ACCTTGAAGC TACGTCGTTT 
    AGTGACAACC AATGTCTCTG CGGTGGCCCT TTGACGACGT CATGTTAATA 
    ACAAGGATAT GGTTTCTGGT TTTACTGAAC CGGGTTATTC TTTTTGCTGT 
    TGCTCTTGTT CGTTGTATCA AACTTGTGAT ATTTTGCTTT TCATTTCTTC 
    GTCTTTCAGA TTTTAGTTTC TAAAGCTAAG ATATGTTACT GGCAACGGAC 
    AGGTACACCG ATCCAATATG GTTTGCGGTC TATGTACAAT GAATCCGGAT 
    GTAAAATCAA AAGCAATGTT ATAGAATTTA ATTTCAAGAT C

    Gene models with high sequence identity

    1. AT3G12610.1 [+] show detail - Leucine-rich repeat (LRR) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LRR RECEPTOR-LIKE KINASE 1.4e-80
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.4e-80
    Gene3D no description 3.4e-65
    Gene3D no description 3.4e-13
    superfamily L domain-like 2.4e-78
    HMMPfam Leucine-rich repeat 0.023
    HMMPfam Leucine-rich repeat 0.97
    HMMPfam Leucine-rich repeat 0.031
    HMMPfam Leucine-rich repeat 0.88
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 2e-09

    See the detailed result >

    AT3G12610.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat (LRR) family protein
    Curator Summary
    Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.
    Computational Description
    DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G20820.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR