F27310

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27310

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27310

Determination of introduced cDNA(s)

  • RAFL05-15-D05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-D05 - Resource: pda01304

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-D05 - full reading
    ATCAAACCTC AACAAAAATA CTCTCTCTTA TTTCAGACTT TTCAGACAAA 
    AACAGAGAGA AACTTTTTGT GTTTATGTGT TTTAAGATCT GATTGATAAA
    AAAGATGCAA GTTATTTCTC CTTCGTCTCC GGCGCCGAGA TTCGCCGGAA
    AAGAGAGATT TTCAGAAGTT TACGGCGAAC TAAACGACGA TTTTGGCTCT
    AAACTGAAGA TTAGTTCTAA AGAGGAAGAA AACAGAGATG ATGATTCATG
    GTGGAATCAG AACGGAACTG ATAAAGATGA TGAAGGAAGA GAAGAAGATT
    TCTCATTCGC AAGTGTAAAC GCAGATAATT CACCGATAAC CGCAGATGAA
    GCATTCGAAG ACGGTCAGAT CCGACCGGTT TATCCTCTGT TTAACCGGAA
    TATTTTCTTC GATGATCCAG AGGAAAAAAC TTTACGTTCA CCTCTCAAGA
    AACTCTTCGT TGAATCCACA ACCACAGAAG AAGAAGAAGA AGAGTCAGAT
    ACGGTGGGTC CATATTGTTC ATGGACAAAT CGTACGGTGG AGCAAGCATC
    ACCAGAGACT TGTCGGAAAA GTAACTCAAC AGGGTTCTCA AAGCTATGGA
    GATTTAGAGA TCTTGTTTTG AGAAGTAACA GTGATGGAAA AGATGCGTTT
    GTGTTTTTAA GCAACGGCTC TTCATCTACA TCGTCGACGT CGTCTACGGC
    GGCGAGATTG AGTGGTGTGG TGAAGTCGTC GGAGAAAGGG AAAGAGAAAA
    CGAAGACGGA TAAGAAGAAG GATAAGATGA GAACGAAATC GGCACATGAG
    AAATTGTATA TGAGAAACAG AGCAATGAGA GAAGAAGGGA AACGAAGATC
    GTATCTTCCG TATAAACATG TTGGGTTCTT CACTAATGTT AATGGTTTAA
    CCAGAAATGT TCATCCCTAT TGATTAAACC GATCTGTCGT ACCAAAATCT
    CTACCGACAA ATCTTTGCCT TTTGTATATA TCTAACCTTT TTTTTGGTTT
    CTGTGTATTA TAAAACCTTC TTTTTGTAAG TAAAAGTGAA ACTTTACTTA
    TTAACTTTTC GTTTGTATCA TTTGATTAGT TTTTTTTCTT CTTTGATGTA
    AAGTATTTTT TGATTTTGAA AGTAGTAGAG AAAAGATTCA CC

    Gene models with high sequence identity

    1. AT1G70420.1 [+] show detail - Protein of unknown function (DUF1645)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G70420.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1645)
    Computational Description
    Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G23710.1); Has 179 Blast hits to 179 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR