F27337

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27337

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27337

Determination of introduced cDNA(s)

  • RAFL05-11-A20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-A20 - Resource: pda09298

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-A20 - full reading 
    ATGAGCTATT GAGCTAGTAG CCTCTTGTAC TCTTCCATTT TACGCGCAAT 
    CCACGCACCA ACAAAAAGAA AAGAAAAGAA GAGATAAAGA ATATCTTTAA 
    AAAGTAAGTG TGGAGAATTC TTTCTTCTCA ATAAACAACA ACATGTCGTC 
    GAGCAATGAA AATGCTAAGG CACAAGCGCC GGAGAAATCT GACTTTACCC 
    GGAGATGTAG TTTGCTCAGC CGTTACTTGA AGGAGAAGGG TAGTTTCGGA 
    AACATTGATC TTGGCTTATA CCGAAAACCC GATTCCAGTC TCGCGTTGCC 
    CGGAAAATTC GATCCACCAG GGAAACAAAA TGCGATGCAT AAGGCAGGGC 
    ATTCCAAAGG CGAACCCTCT ACCTCATCAG GAGGCAAAGT CAAAGATGTT 
    GCTGACCTCA GTGAATCACA GCCAGGAAGT TCGCAGCTGA CCATATTCTT 
    CGGAGGGAAA GTTTTAGTAT ATAATGAGTT CCCCGTAGAC AAAGCTAAAG 
    AGATTATGGA AGTAGCAAAA CAAGCCAAGC CTGTGACTGA GATTAACATT 
    CAGACACCAA TCAATGACGA AAACAACAAC AACAAGAGCA GCATGGTTCT 
    TCCTGATCTC AATGAGCCTA CTGATAATAA TCACCTAACA AAGGAACAAC 
    AACAGCAACA AGAACAAAAT CAGATCGTGG AACGTATAGC ACGTAGAGCT 
    TCCCTCCATC GATTCTTTGC TAAACGGAAA GACAGAGCTG TGGCTAGGGC 
    TCCGTACCAA GTTAACCAAA ACGCAGGTCA TCATCGTTAT CCTCCCAAGC 
    CAGAGATTGT AACCGGTCAA CCACTAGAGG CAGGACAGTC GTCACAAAGA 
    CCGCCGGATA ACGCCATTGG TCAAACCATG GCCCATATCA AATCAGACGG 
    TGATAAAGAT GATATTATGA AGATTGAAGA AGGCCAAAGT TCGAAAGATC 
    TCGATCTAAG GCTATAGTAA TATTTGCTAA ATTTCTTGTA GGAACTGAGT 
    TTTTAGATTA ACGTTTCGAT TTTTCTGACT TATCTAAGTG ATTTTATTTT 
    GCTTTGTAC

    Gene models with high sequence identity

    1. AT1G17380.1 [+] show detail - jasmonate-zim-domain protein 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Tify 15.595
    HMMPfam Tify 1.3e-15
    HMMPfam CCT domain-like 1.1e-12

    See the detailed result >

    AT1G17380.1

    Model type
    Protein coding
    Short Description
    jasmonate-zim-domain protein 5
    Computational Description
    jasmonate-zim-domain protein 5 (JAZ5); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 6 (TAIR:AT1G72450.1); Has 301 Blast hits to 296 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR