F27339

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27339

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27339

Determination of introduced cDNA(s)

RAFL09-17-J24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-17-J24 - Resource: pda01946

full reading [+] show sequence

ACTCCATTCC ACTCTCGTCC CGCTTCGCCT CTTTTAGGGC GCAACCAAGA 
GACAGAGAAG AAGAGAGAGA CTCGTAAGCA ACAATAACCA ATAGCTCTCT 
CTCTCTCTCT CTCTCTCTCC TCTGCTGATT CTTCGCTGAC TCTTGCCTCC 
TCGACGTCGT CTTCGGCTTT GTAGCATCTC GCCGAAGCGT CGTTGATTTG 
AGAGAGACCC AATTTGGATT GTTAGAAAAT GGGTTACATA GGAGCTCATG 
GTGTAGCTGC TCTTAAGAAA CACAAATACA GTGGTGTTGA TCACTCTTAT 
CTTGCCAAAT ATGTTCTCCA ACCTTTTTGG AACCGTTTTG TCAAAATCTT 
CCCTCTATGG ATGCCCCCCA ACATGATAAC ACTTATGGGG TTCATGTTTC 
TTCTCACATC TGCTCTCTTA GGCTATATAT ACTCACCTAA GTTGGATTCT 
CCACCTCCTC GATGGGTCCA CTTTGCACAC GGCTTACTTC TGTTTTTATA 
TCAGACATTT GATGCGGTTG ATGGGAAGCA AGCACGAAGA ACAAATTCAT 
CTAGCCCACT AGGAGAGCTT TTTGACCATG GTTGCGATGC ACTTGGCTGT 
GCGTTAGAAA CAATGGCATA TGGGAGTACT GCTATGTGTG GAAGAGATAC 
TTTCTGGTTT TGGGTTATTT CTGCTGTTCC ATTTTTTGGA GCAACATGGG 
AACACTATTT TACCAATACG CTTACTCTTC CGGTAGTCAA TGGTCCTACA 
GAAGGTCTTG CACTTATATA CTGTGGCCAT TTCTTCACAG CCATTGTTGG 
TGCGGAGTGG TGGGCTCAGC CGTTTGGGAA GTCGATTCCT TTGTTTAGTT 
GGGTTCCGTT TTTGAACGAG ATGCAAATGT CCAGAATAAT ACTATTCTCC 
ATGATTTTCT TTGCTGTTAT ACCAACCCTT GCAATCAACA CGTCTAATGT 
TTACAAAGTT GTACATTCAA GAAATGGAAG CATGCTTCTA GCATTAGCTA 
TGCTATATCC CTTAGTCACG TTAATTGCAG GAGTTCTGAT TTGGGATTAC 
TTGTCTCCAA TTGATCTCAT AAGAAACTAC CCTCACTTAG TTGTGTTGGG 
AACTGGTCTT GCATTTGGAT TCCTTGTGGG AAGAATGATT CTAGCTCACT 
TATGTGACGA ACCAAAAGGA TTGAAAACAA ACATGTGTAT GTCACTGCTT 
TACCTTCCAT TTGCACTAGC AAATGCTCTA ACCGCTAGAC TCAACGACGG 
GGTTCCTCTT GTGGATGAGT TTTGGGTTCT TCTTGGATAT TGTATATTCA 
CATTGTCACT ATATGCGCAT TTTGCAACTT CAGTCATTCA TGAGATCACA 
ACTGCACTTG GAATCTACTG CTTCAGGATT ACTCGGAAAG AAGCTTGAAG 
AAACAAAATG TGATTGAAAT TTTTATTTAT AAGAAAAAGC AAATCTTAAG 
GGAGAAAAAA AATGCAAATC CCAACACGAA TCTGAATATT TTGTTACTTG 
GAATTAAAAA TGATTGACTG ATATGCTTTT GGATGTATAC TCATTAATGT 
TTTTGTTTTA GTGTTTTTTT TCTTGTTCGG TTGAAATAGG GTAATTCATG 
TAGAACCTTT TTGTGTAACG TTTCTAAGAA AAAAAAATAT GGGATTGTTC 
CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

AT3G25585.1 [+] show detail - aminoalcoholphosphotransferase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPIR	Choline/ethanolaminephosphotransferase	7.1e-204
PatternScan	CDP-alcohol phosphatidyltransferase	0
HMMPfam	CDP-alcohol phosphatidyltransferase	2.4e-18
HMMPanther	ETHANOLAMINEPHOSPHOTRANSFERASE	5.8e-204
HMMPanther	ETHANOLAMINEPHOSPHOTRANSFERASE	5.8e-204

See the detailed result >

AT3G25585.1

Model type: Protein coding
Short Description: aminoalcoholphosphotransferase
Curator Summary: aminoalcoholphosphotransferase (AAPT2) mRNA, complete cds
Computational Description: aminoalcoholphosphotransferase (AAPT2); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase 1 (TAIR:AT1G13560.1); Has 933 Blast hits to 927 proteins in 242 species: Archae - 10; Bacteria - 37; Metazoa - 367; Fungi - 227; Plants - 82; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
Link: InterPro Scan - TAIR