F27402

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27402

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27402

Determination of introduced cDNA(s)

  • RAFL05-14-L06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-L06 - Resource: pda07311

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-L06 - full reading
    TATTGCGCGG CATCTCTCTC GTCTTCCTTT ACTCCGTCAA AACCATGTTT 
    CTAAGTCAGT GCCGGAGCTG TAAACCTTTG CTCGAGTCTC GTATACCTTT
    GCTCCGCCTC TCTCTCTCTA AATGTCTCGA TCAGTCCTTC AAAACCACGG
    CTAGTAGCGA ATACGGTAGT AAGATCCCTG ATGCTCTTCT GGGACATCGA
    AGACTGGAAG ATCATAAGGC AAGCGTCTTC TGGGACGTGG AGGACTACAA
    GATCCCTGAT GGTCTCAGTG CTGGTGAGGT TTCGAAGAAC ATCAATACGG
    CTTTTGCGAA AATGGGATAT CCTGGTACGG TCTCAATCAA GGCTTATGCT
    GATGAGACGA ATCAGAGGAT CCAGGATAAG GAGTTTCACT CCGCCGGTAT
    CGAGCTCAAG CGCGTACCAG AAGGCTTGAA AGGAAAGGAT CATTCGAGAG
    ATATAGCTGT TTTAACTGGC ATGGGGGTGT GGATTACTGT CAATCGTGAT
    GTATCATCAT CGATAATGCT AATCTCAGAT AGCATCTACG GTTTTGCTGT
    AGACGAGTTT AAGAAGGTGA ATCATTATGT TCTTTGGAAA AAACTATCAG
    CTAAGGGCAA GCCTATCGCC CAGACCAGAA GATACTCTAA ACGTTGAGAC
    CAGATATACT TGGTTCTCTC CATGCTAATT GTTGGGTTTT GAATAAGTCA
    ATCACTAAGT CAAGTCTTAG CTTGTTTTTA GGAACTGATT GAGTTTTCTT
    GTTTTGAGTT TGTTTCGTTT TTCAGTTCCG TTTCTTATTC CTTAGTTTTC
    GTATTCACGT TGTAAGGCTC TTATAAAAGC CAATTTCAGT CTAATGAATT
    AAACACGAAT CATTCAGC

    Gene models with high sequence identity

    1. AT3G62460.1 [+] show detail - Putative endonuclease or glycosyl hydrolase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G62460.1

    Model type
    Protein coding
    Short Description
    Putative endonuclease or glycosyl hydrolase
    Computational Description
    Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62210.1); Has 141 Blast hits to 133 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR