F27415

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27415

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep red

Original: F27415

Determination of introduced cDNA(s)

RAFL04-13-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-C05 - Resource: pda16963

full reading [+] show sequence

GAATCTGCCT TCAATGGCTT CTTCAGCAGC AGCCATCGTC TCCGGTTCTC 
CATTTCGTTC TTCACCATTA ATCCATAACC ATCATGCTTC TCGTTATGCT 
CCTGGATCCA TCTCCGTCGT ATCTCTCCCC CGTCAAGTTT CCCGCCGTGG 
CCTCTCCGTT AAATCGGGGT TGATCGAGCC AGACGGAGGA AAACTCATGA 
ACCTCGTAGT CGAAGAATCA CGGCGGCGCG TGATGAAACA CGAGGCGGAG 
ACGGTTCCGG CAAGGATCAA GCTGAACCGT GTGGATCTAG AGTGGGTACA 
TGTGCTTAGC GAAGGCTGGG CAAGTCCTCT CAAAGGTTTC ATGAGACAGT 
CAGAGTTCCT CCAAACACTT CATTTTAACT CGTTCCGGCT CGAAGACGGC 
TCCGTCGTCA ACATGTCGGT TCCGATCGTC CTCGCTATCG ACGACGATCA 
GAAGTTTCGT ATCGGGGATT CCAACCAAGT CACACTCGTT GACTCGGTTG 
GTAATCCCAT CGCGATTCTC AACGAGATTG AGATTTACAA GCATCCCAAA 
GAAGAACGAA TCGCGAGAAC ATGGGGAACC ACGGCTCGTG GGCTTCCTTA 
TGCGGAAGAA GCAATCACCA AAGCTGGAAA CTGGTTGATT GGAGGTGATT 
TACAAGTTTT GGAGCCGATC AAGTACAATG ATGGTTTAGA CCGGTTTCGT 
TTATCTCCGT CGCAGCTGCG GGAGGAGTTT ATAAGGCGCG GTGCGGACGC 
GGTTTTCGCG TTCCAGCTTA GGAACCCGGT GCATAATGGT CATGCGCTTC 
TTATGACGGA TACTCGTAGA AGACTTCTTG AGATGGGTTA CAAAAACCCT 
GTCTTGTTGT TGAATCCACT TGGTGGGTTT ACTAAGGCTG ATGATGTACC 
TCTCAGCTGG CGTATGAGAC AGCACGAGAA GGTGTTGGAG GATGGTGTAC 
TGGATCCAGA GACCACTGTA GTCTCTATCT TCCCATCTCC GATGCTATAC 
GCTGGCCCAA CTGAGGTTCA ATGGCATGCC AAAGCTAGGA TCAACGCGGG 
AGCTAATTTC TACATTGTTG GTCGCGATCC TGCCGGTATG GGCCATCCGA 
CAGAGAAGAG AGATCTTTAT GATGCCGATC ACGGGAAGAA AGTGCTTAGC 
ATGGCACCAG GACTTGAACG CCTCAACATT CTACCCTTCA AGGTCGCTGC 
ATATGACAAA ACTCAGGGGA AAATGGCCTT CTTTGATCCT TCCAGGTCTC 
AAGACTTCCT CTTCATATCA GGAACCAAGA TGCGTGGGTT GGCGAAGAAG 
AAAGAGAACC CACCAGATGG TTTCATGTGT CCCTCTGGTT GGAAGGTGTT 
GGTTGACTAC TACGACAGTC TCAGTGCAGA GACTGGTAAT GGAAGGGTTT 
CAGAAGCTGT TGCTTCTGCT TGAATGCAAA AGGTTTCCTT GTCCCACAAG 
ATTCACATTT CCTGTTTGTT AGTAACTAAA CTCCGTGACA AAAAGCTTCC 
AATAAAACCA ATGTAACATC TGTGTGTTCT TTGCGTCTCT GTTGTCAAAC 
TTGTCGTCGA GTCGCATCGA TTTGTACCAT ATTTGCTTAT TGTGTTTTAA 
ATGTAACAAC ATTTGTGTAT GAAAAAAAAA A

Gene models with high sequence identity

AT5G43780.1 [+] show detail - Pseudouridine synthase/archaeosine transglycosylase-like family protein
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.4e-50
Gene3D	Rossmann-like alpha/beta/alpha sandwich fold	5.1e-67
superfamily	Nucleotidylyl transferase	8.7e-75
superfamily	Pseudouridine synthase/archaeosine transglycosylase-like	5.2e-46
HMMPanther	SULFATE ADENYLYLTRANSFERASE	1.9e-179
HMMPanther	ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERAS	1.9e-179
HMMTigr	Sulphate adenylyltransferase	3.5e-198
HMMPfam	Sulphate adenylyltransferase	5.9e-85

See the detailed result >

AT5G43780.1

Model type: Protein coding
Short Description: Pseudouridine synthase/archaeosine transglycosylase-like family protein
Curator Summary: sulfate adenylyltransferase, ATP sulfurylase
Computational Description: APS4; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase/archaeosine transglycosylase-like family protein (TAIR:AT4G14680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR