F27415

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27415

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F27415

Determination of introduced cDNA(s)

  • RAFL04-13-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-C05 - Resource: pda16963

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-C05 - full reading
    GAATCTGCCT TCAATGGCTT CTTCAGCAGC AGCCATCGTC TCCGGTTCTC 
    CATTTCGTTC TTCACCATTA ATCCATAACC ATCATGCTTC TCGTTATGCT
    CCTGGATCCA TCTCCGTCGT ATCTCTCCCC CGTCAAGTTT CCCGCCGTGG
    CCTCTCCGTT AAATCGGGGT TGATCGAGCC AGACGGAGGA AAACTCATGA
    ACCTCGTAGT CGAAGAATCA CGGCGGCGCG TGATGAAACA CGAGGCGGAG
    ACGGTTCCGG CAAGGATCAA GCTGAACCGT GTGGATCTAG AGTGGGTACA
    TGTGCTTAGC GAAGGCTGGG CAAGTCCTCT CAAAGGTTTC ATGAGACAGT
    CAGAGTTCCT CCAAACACTT CATTTTAACT CGTTCCGGCT CGAAGACGGC
    TCCGTCGTCA ACATGTCGGT TCCGATCGTC CTCGCTATCG ACGACGATCA
    GAAGTTTCGT ATCGGGGATT CCAACCAAGT CACACTCGTT GACTCGGTTG
    GTAATCCCAT CGCGATTCTC AACGAGATTG AGATTTACAA GCATCCCAAA
    GAAGAACGAA TCGCGAGAAC ATGGGGAACC ACGGCTCGTG GGCTTCCTTA
    TGCGGAAGAA GCAATCACCA AAGCTGGAAA CTGGTTGATT GGAGGTGATT
    TACAAGTTTT GGAGCCGATC AAGTACAATG ATGGTTTAGA CCGGTTTCGT
    TTATCTCCGT CGCAGCTGCG GGAGGAGTTT ATAAGGCGCG GTGCGGACGC
    GGTTTTCGCG TTCCAGCTTA GGAACCCGGT GCATAATGGT CATGCGCTTC
    TTATGACGGA TACTCGTAGA AGACTTCTTG AGATGGGTTA CAAAAACCCT
    GTCTTGTTGT TGAATCCACT TGGTGGGTTT ACTAAGGCTG ATGATGTACC
    TCTCAGCTGG CGTATGAGAC AGCACGAGAA GGTGTTGGAG GATGGTGTAC
    TGGATCCAGA GACCACTGTA GTCTCTATCT TCCCATCTCC GATGCTATAC
    GCTGGCCCAA CTGAGGTTCA ATGGCATGCC AAAGCTAGGA TCAACGCGGG
    AGCTAATTTC TACATTGTTG GTCGCGATCC TGCCGGTATG GGCCATCCGA
    CAGAGAAGAG AGATCTTTAT GATGCCGATC ACGGGAAGAA AGTGCTTAGC
    ATGGCACCAG GACTTGAACG CCTCAACATT CTACCCTTCA AGGTCGCTGC
    ATATGACAAA ACTCAGGGGA AAATGGCCTT CTTTGATCCT TCCAGGTCTC
    AAGACTTCCT CTTCATATCA GGAACCAAGA TGCGTGGGTT GGCGAAGAAG
    AAAGAGAACC CACCAGATGG TTTCATGTGT CCCTCTGGTT GGAAGGTGTT
    GGTTGACTAC TACGACAGTC TCAGTGCAGA GACTGGTAAT GGAAGGGTTT
    CAGAAGCTGT TGCTTCTGCT TGAATGCAAA AGGTTTCCTT GTCCCACAAG
    ATTCACATTT CCTGTTTGTT AGTAACTAAA CTCCGTGACA AAAAGCTTCC
    AATAAAACCA ATGTAACATC TGTGTGTTCT TTGCGTCTCT GTTGTCAAAC
    TTGTCGTCGA GTCGCATCGA TTTGTACCAT ATTTGCTTAT TGTGTTTTAA
    ATGTAACAAC ATTTGTGTAT GAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G43780.1 [+] show detail - Pseudouridine synthase/archaeosine transglycosylase-like family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.4e-50
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.1e-67
    superfamily Nucleotidylyl transferase 8.7e-75
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 5.2e-46
    HMMPanther SULFATE ADENYLYLTRANSFERASE 1.9e-179
    HMMPanther ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERAS 1.9e-179
    HMMTigr Sulphate adenylyltransferase 3.5e-198
    HMMPfam Sulphate adenylyltransferase 5.9e-85

    See the detailed result >

    AT5G43780.1

    Model type
    Protein coding
    Short Description
    Pseudouridine synthase/archaeosine transglycosylase-like family protein
    Curator Summary
    sulfate adenylyltransferase, ATP sulfurylase
    Computational Description
    APS4; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase/archaeosine transglycosylase-like family protein (TAIR:AT4G14680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR