F27425

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27425

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27425

Determination of introduced cDNA(s)

  • RAFL04-13-G17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-G17 - Resource: pda00295

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-G17 - full reading 
    ATCATCATCA CCCACAGCAC AGAGACACAC ACAAAAAACC CATAAAAAAA 
    TATGGCAAAT ATCTCCAGTA TTCACATTCT CTTCCTCGTG TTCATCACAA 
    GCGGCATTGC TGTTATGGCC ACAGACTTCA CTCTAAGGAA CAATTGCCCT 
    ACCACCGTCT GGGCCGGAAC TCTCGCCGGT CAAGGACCCA AGCTCGGCGA 
    TGGAGGATTT GAATTGACTC CAGGTGCTTC CCGACAGCTC ACGGCTCCTG 
    CAGGATGGTC AGGCCGGTTC TGGGCTCGTA CAGGCTGCAA CTTTGACGCC 
    TCCGGAAACG GTAGATGTGT AACCGGAGAC TGTGGCGGTC TAAGATGTAA 
    CGGCGGCGGA GTTCCTCCCG TCACTCTGGC TGAATTCACT CTAGTAGGCG 
    ATGGCGGCAA AGATTTCTAC GATGTGAGCC TCGTAGATGG TTACAATGTC 
    AAGCTGGGGA TAAGACCATC CGGAGGATCG GGAGATTGCA AATACGCAGG 
    CTGTGTCTCT GACCTCAACG CGGCTTGCCC CGACATGCTT AAGGTCATGG 
    ATCAGAACAA TGTCGTGGCC TGCAAGAGTG CCTGTGAGAG GTTTAATACG 
    GATCAATATT GCTGCCGTGG AGCTAACGAT AAGCCGGAAA CTTGTCCTCC 
    CACGGACTAC TCGAGGATTT TCAAGAACGC TTGCCCTGAC GCCTATAGCT 
    ACGCTTATGA CGACGAAACG AGCACCTTCA CTTGTACCGG AGCTAACTAC 
    GAAATCACTT TCTGCCCTTA AAAACCGAAG CTTCGAGTTA GATACAGTCG 
    GGTTTAATTA TCTCTCACGT TTCTTTTGCT TATTATGTAC GGAAAGATAA 
    ATAAGGAAAG CTGATGACTA TGAATCATCG TCTTCCACTT TTAAGCTTTT 
    TTAGTGAGTA TTAGTCAGTT GTTACACCCA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT1G75040.1 [+] show detail - pathogenesis-related gene 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Thaumatin, pathogenesis-related 7.3e-27
    FPrintScan Thaumatin, pathogenesis-related 7.3e-27
    FPrintScan Thaumatin, pathogenesis-related 7.3e-27
    FPrintScan Thaumatin, pathogenesis-related 7.3e-27
    FPrintScan Thaumatin, pathogenesis-related 7.3e-27
    FPrintScan Thaumatin, pathogenesis-related 7.3e-27
    superfamily Thaumatin, pathogenesis-related 3.8e-125
    PatternScan Thaumatin, conserved site 0
    HMMPIR Thaumatin, pathogenesis-related 3e-131
    HMMPfam Thaumatin, pathogenesis-related 5.4e-90
    HMMSmart Thaumatin, pathogenesis-related 2.1e-163
    Gene3D Thaumatin, pathogenesis-related 2.1e-77
    ProfileScan Thaumatin, pathogenesis-related 49.685

    See the detailed result >

    AT1G75040.1

    Model type
    Protein coding
    Short Description
    pathogenesis-related gene 5
    Curator Summary
    Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.
    Computational Description
    pathogenesis-related gene 5 (PR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75050.1); Has 1613 Blast hits to 1588 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 84; Plants - 1422; Viruses - 4; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR