F27434

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27434

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27434

Determination of introduced cDNA(s)

  • RAFL05-19-P23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-P23 - Resource: pda01372

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-P23 - full reading 
    GAAAACCAGA CTAAAGGGCA GAAACGTCAT TTGACAAAAA GAAGGATGAT 
    TCTCTCCTTC CTCTTTCCCC AATGCAAAGA AAAAGCATTA TAGACTTTTC 
    AAGTTTTCCG ATATAGGCAC GAAATCGCTA TTTCTCTCTT CGACGAAGCT 
    TTGATAATTT GATCTCAATC GATCGATTCT ATTGAGAATT TGTGTACCTG 
    TTTTCTTATA AGGTTAACTA AGGATTGTGG AATCAGAAGT GTTGTGTTTT 
    TGTGATCGGA GATTATGGAT TGGGGAAACG TAACGGTTGA TGATCTCTTC 
    GATGCTCTCC GAGAAGTTGA CTGGTCGTCT CCGCCGCGTC CTCCGTCTGA 
    GTTCTTCTCA AGGTTCACCG TTCCTAAATC TGTCCCTAAA TGGGATAGTC 
    GCCTCAAGTG CAATCTCTAC TACTACCGAA CAAACTATTT CATCATGATC 
    GTCGTTATAC TTGGATTGGG AGTCCTTACA AGGCCTTTAG CGATCTTCGC 
    TGCGCTTTTG ACAGCATTAA GTTTGGCATT TCTAAATGAC AGCTTTGCAG 
    GTTCTTTTAG TGAGAAGGCG ACACGAACCG TCAGAAGATT CTCTCCACAG 
    TTAGCTGCTA AAATGAGACC TCCTTTGACA CCTGTCACTC GTGGGCGTCC 
    ATCATCAAAG AGAGCAATCC ATGTATGTGG TCAACCCCGT TGGGTTTTTG 
    TCTTGACATG CTCACTTGTG AGTTTTGCTC TTTGGTATAT TTCCTCTGGT 
    TTGCTCAGAG TCTCGGTTGC GCTACTCATT GCACATCTTG CAACAATTCT 
    TCATGCAAGC TTGAGAACAC CGAACTTGAA GGCACGTTTT AACACATTTA 
    GGGAGGAATT CCGAGCAGTA TGGCGTAACT ACAGCGAGAT TTAGAGTAAT 
    TCTTTGGCAG CTTGTACCAC CATGATCGTG TTCTGCTGAG GACATAACGC 
    TGTAAAGACC AAACTTACTG CCTTTCTCCA AGATAAACCC GGTTTCGTTA 
    ACACTGTACT ATGGATGTTC AATCTGGATT TGTTGCTCAA TGACTGGGAT 
    CATCTGTTTT TTCTTTGATT TGAGATTTGA GCTCTGAGCT CTTTTTGCTA 
    GCAAAATCCT CTCTTTTTTT TTTTGCTAAA GACTTGTAAA GCTAGCTTTG 
    TTGTTCTTCG TTCTAACACA AAACCCTTTG TGTAAAGTCC TAGAATCGTT 
    TAATAGCTTG CATTTTTTTC CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT5G02040.1 [+] show detail - prenylated RAB acceptor 1.A1
      E-value: 0; Score: 99.59

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRA1 PROTEIN 0.0000011
    HMMPfam Prenylated rab acceptor PRA1 1.6e-37

    See the detailed result >

    AT5G02040.1

    Model type
    Protein coding
    Short Description
    prenylated RAB acceptor 1.A1
    Computational Description
    prenylated RAB acceptor 1.A1 (PRA1.A1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11402.2); Has 236 Blast hits to 236 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 12; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR