F27504

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27504

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F27504

Determination of introduced cDNA(s)

  • RAFL09-19-C22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-C22 - Resource: pda05490

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-C22 - full reading 
    TGCAGGTTTT GAATTTGAAA ACGGAGTTAG AGGAAGCTCG TAATTCAAAT 
    GTAGAGCTTG AGTTGAATAA TAGGAAGCTT TCTCAGGATC TTGTTTCAGC 
    TGAAGCTAAG ATCTCATCTC TTTCTTCTAA CGACAAGCCA GCTAAAGAAC 
    ATCAAAACAG CAGATTCAAA GATATCCAGA GGTTAATAGC TAGCAAATTA 
    GAGCAACCCA AGGTTAAGAA GGAGGTAGCA GTAGAGTCAT CAAGATTATC 
    TCCACCATCA CCTTCTCCTT CAAGATTACC GCCAACACCG CCATTACCGA 
    AGTTTTTGGT GTCTCCAGCT AGCAGTTTAG GTAAAAGAGA TGAAAATTCT 
    TCACCCTTTG CACCTCCAAC ACCACCGCCT CCGCCGCCAC CACCACCACC 
    TAGACCTCTT GCTAAAGCAG CTCGTGCTCA GAAGTCTCCT CCAGTTTCAC 
    AGCTATTTCA GTTGTTGAAT AAGCAAGATA ATAGTAGAAA CCTTTCTCAG 
    TCTGTTAATG GGAATAAGTC TCAAGTTAAC AGTGCTCACA ACAGTATAGT 
    CGGAGAAATT CAAAACCGTT CTGCGCATCT CATCGCTATA AAAGCTGATA 
    TAGAGACAAA AGGGGAGTTT ATCAATGATC TTATCCAGAA AGTTCTGACC 
    ACTTGTTTTT CGGATATGGA AGATGTCATG AAATTTGTGG ATTGGCTTGA 
    TAAAGAACTG GCAACTCTGG CTGATGAGCG TGCTGTGCTT AAGCATTTCA 
    AGTGGCCTGA GAAGAAAGCC GATACCCTGC AAGAGGCTGC AGTTGAATAC 
    CGTGAGCTAA AGAAACTGGA AAAAGAACTT TCTTCCTACT CTGATGATCC 
    GAACATTCAC TACGGTGTTG CCCTGAAGAA AATGGCCAAC TTACTAGACA 
    AGTCGGAGCA GAGGATAAGG AGGCTAGTCA GATTACGTGG CTCATCCATG 
    CGTTCTTACC AGGACTTTAA GATCCCAGTC GAGTGGATGC TTGACTCGGG 
    AATGATATGC AAGATCAAAA GAGCATCGAT CAAACTTGCG AAAACCTACA 
    TGAATAGAGT AGCGAATGAG CTGCAATCAG CTCGTAACTT GGATAGAGAG 
    TCTACTAAAG AAGCATTGCT TCTTCAAGGC GTCCGATTTG CTTACAGAAC 
    GCACCAGTTT GCGGGAGGGC TCGATCCAGA GACATTGTGT GCATTAGAAG 
    AGATTAAGCA ACGTGTTCCG AGTCATCTCC GGCTGGCACG GGGGAATATG 
    GCCGGAAATC TGTCGTAGAA AAGTAATCAG AGAAATGTGA GGCATATGGG 
    CTGTGGTTCT GGCTACAAAA TTCGTTATTT GTGTTAATAG TGTTTGGTGA 
    GTCAGGTTGT GTCCCATTTA ATAATAATGT TATAATGTAT CTAAAATGTT 
    CCTCCAGTGA ATTACTCAAT TAATTTTTGC GCC

    Gene models with high sequence identity

    1. AT1G48280.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G48280.1

    Model type
    Protein coding
    Short Description
    hydroxyproline-rich glycoprotein family protein
    Computational Description
    hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 10788 Blast hits to 7587 proteins in 614 species: Archae - 16; Bacteria - 992; Metazoa - 4057; Fungi - 1231; Plants - 2229; Viruses - 567; Other Eukaryotes - 1696 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR