F27622

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27622

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27622

Determination of introduced cDNA(s)

  • RAFL09-19-I20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-I20 - Resource: pda05515

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-I20 - full reading 
    CTCCCCAGAA AAGAGAAATG AAGAGATACC AAAATCTAAA GGTAGGAGAA 
    GCTTTCTCCA AAAATCGTAT TTACCCATTT GCTTGCAATG AACTAAGCTC 
    CATATTGAAT CTTGCTTACT CTCTATCACC CAAAAATGTC AAAGCTTTGA 
    TCTTCCAAGA TACCCTCTCC GCTTTTCGTC TTCTTCCCGA CATCAATACA 
    TCAGCTGCTG TTTCAGCCGC TAACCTTCTC CTGAAGAGCG TGGAAGCGGT 
    GCTCCCCAAA CAGAAGAAGA ATTTAGCCAT TGTAGAATTC AAGCAGGCAA 
    AAGTAGCACT AAAGAGGCGT AGTAAGAACC GTGAGGAAGA AGATATAGAT 
    ATACCTTCAC TTCCACAAGA TATCCTTATT CACATCTTCA GTTTCCTCGA 
    GATATCGTCC TTAGTTTCCT CAGCTCAAGT GTCTCGCTCT TGGAACCAAG 
    CAACGCATGA GAACTCTCTG TGGCAATCAC AATTTGACCT TCACTTCAAT 
    CACAAAGTCT TGATTCGTAT GCAGTCCGAT ATTGACTGGA GAGAAGCCTT 
    TAAGAAAGCA TACATCGCGG CTAATTCATC GGAGGCATTG AGATCTGGCC 
    GGGGATACTG CAGTTACTGT GATTCTATTG TTTGGCACGA AAACTTGAGA 
    TGTCTGAACA AACAATGTCG GTTGAAATCA GGCAACAAGC CACTCGACCT 
    CATAACAACT CACCAGGTTG TCAACTATTT GCTGGGGATA GAGAGTTCTG 
    ATGATGAAAG CGAATCAGAC GATGAAGCCT TTCCTGGACG ACTATGGAAA 
    CTTTCTTACG TGCCTGATTA CTTGTAAATC ACTAAAGAGA AATATATGGC 
    CCTATATGGG CTTGTGGTAC CTCATTGGAC CATTTGGCCT TACTAAGAAT 
    GTTTGTGTAG TTTCAAGCCT ACTTGATTAG CTTTTTGTTT GCAGATACGT 
    ATGGTAATAT TGTGTTTTAT CTAAAAGAAG TTTCTACTTT TC

    Gene models with high sequence identity

    1. AT5G52880.1 [+] show detail - F-box family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CELL DIVISION CONTROL PROTEIN 4 2.5e-06
    HMMPanther F-BOX AND WD40 DOMAIN PROTEIN 2.5e-06
    Gene3D no description 3.1e-07
    HMMSmart F-box domain, cyclin-like 1.2e-07
    HMMPfam F-box domain, cyclin-like 2.4e-09
    superfamily F-box domain, Skp2-like 6.8e-15
    ProfileScan F-box domain, cyclin-like 12.544

    See the detailed result >

    AT5G52880.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR