F27642

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27642

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F27642

Determination of introduced cDNA(s)

  • RAFL06-67-G19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-G19 - Resource: pda03269

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-G19 - full reading 
    CATTGAGCCG TTATATAAAT CCTTCACTCG CTCCTTGAGA AGACGAATTT 
    GAGATTGCCT CTGCAAAGAG TAAAATGGCG AATCCTAAAG TCTTCTTCGA 
    CATCTTGATT GGTAAGATGA AGGCAGGGCG TGTTGTAATG GAGTTATTTG 
    CAGATGTGAC TCCGAGAACA GCTAATAATT TCCGTGCTTT GTGCACTGGG 
    GAGAATGGTA TTGGGAAAGC AGGGAAGGCT TTACACTACA AAGGCTCAGC 
    CTTTCACCGT ATAATCCCAG GGTTCATGTG TCAAGGTGGA GATTTCACTC 
    GTGGGAATGG AACTGGAGGA GAATCTATTT ACGGGTCTAA ATTTGAAGAT 
    GAGAACTTCA AGTTGAAGCA CACTGGTCCA GGGATTTTGT CTATGGCTAA 
    CTCTGGTCCC AACACTAATG GTTCTCAGTT CTTCATCTGC ACAGAGAAGA 
    CTTCGTGGCT TGATGGGAAA CATGTTGTTT TCGGGAAAGT TGTTGATGGA 
    TACAATGTGG TCAAGGCAAT GGAGGATGTT GGCTCTGACA TGGGAAATCC 
    TTCTGAACGA GTTGTGATTG AAGATTGTGG TGAGCTCAAG AACCCAAGTT 
    CATAAGTTCT TAAAACATTG GGTGGGTTGA TCTTGACAGG TTATTCTATC 
    ATATGCTGTG AAGCAGAGAC AGCATCTTAG CGTTAAGGTC AATCTAGTCT 
    GTGATGCACT ACTTTGGTTT TGACTATATC ATATGAACCT TAGGAAGTGG 
    TCCATCCTTG TAAGTTGTTT TCTTAAAACT CTTGTGTGAG AATAGGATGG 
    ATGATAATAA TGGTTAGTTT CTTTATGAAG ACATTTGGTT TTGGAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G56070.1 [+] show detail - rotamase cyclophilin 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 5.6e-69
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-47
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 45.702
    superfamily Cyclophilin-like 7.2e-76
    HMMPanther CYCLOPHILIN 2.7e-124
    HMMPanther CYCLOPHILIN 2.7e-124
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0

    See the detailed result >

    AT3G56070.1

    Model type
    Protein coding
    Short Description
    rotamase cyclophilin 2
    Curator Summary
    rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.
    Computational Description
    rotamase cyclophilin 2 (ROC2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, cyclosporin A binding; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16518 Blast hits to 16486 proteins in 2631 species: Archae - 108; Bacteria - 6748; Metazoa - 2914; Fungi - 1377; Plants - 1262; Viruses - 4; Other Eukaryotes - 4105 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR