F27714

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27714

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F27714

Determination of introduced cDNA(s)

  • RAFL06-07-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-H09 - Resource: pda07503

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-H09 - full reading 
    ATCTTCTCCA CCAGAATTTG TTTTAGGCTC TCCTTCTTCT GTTTCTTTTT 
    CTCCCAAAGA AACAATTAGA TATGGAGAAC CTTACCCTAG TTTCTTGCTC 
    AGCTTCTTCT CCAAAGCTGT TAATTGGATG CAATTTCACT TCCTCGCTGA 
    AAAACCCTAC TGGGTTTTCT CGTCGGACTC CTAATATTGT CCTCCGGTGT 
    TCCAAAATAT CTGCCTCTGC TCAATCTCAA TCTCCCTCTT CGCGTCCGGA 
    GAACACTGGA GAAATCGTGG TTGTGAAACA GAGAAGCAAA GCTTTTGCAA 
    GTATATTTTC TTCGAGTCGT GATCAACAGA CAACTTCTGT TGCTTCCCCT 
    AGTGTGCCTG TGCCACCACC ATCTTCATCA ACCATAGGAT CACCACTTTT 
    CTGGATTGGT GTTGGTGTTG GTCTATCAGC TTTGTTCTCA TATGTAACTT 
    CAAATTTAAA GAAATATGCA ATGCAAACAG CTATGAAGAC GATGATGAAC 
    CAAATGAATA CGCAAAATAG CCAGTTTAAT AATTCTGGAT TCCCATCAGG 
    ATCACCTTTT CCGTTTCCAT TTCCTCCTCA AACAAGTCCT GCTTCCTCGC 
    CATTCCAATC TCAATCCCAG TCTTCAGGTG CTACCGTTGA TGTGACAGCG 
    ACAAAAGTAG AGACACCTCC TTCAACTAAA CCGAAACCTA CACCTGCAAA 
    GGATATAGAG GTGGATAAGC CAAGTGTTGT CTTAGAGGCA AGCAAAGAGA 
    AGAAAGAAGA AAAGAACTAT GCCTTTGAAG ACATTTCACC CGAGGAAACC 
    ACAAAAGAAA GCCCATTTAG CAACTATGCA GAAGTCTCTG AAACTAATTC 
    CCCCAAAGAA ACTCGCTTGT TTGAGGATGT CTTGCAAAAT GGAGCTGGTC 
    CGGCAAATGG TGCCACTGCT TCAGAGGTTT TTCAATCTTT GGGTGGTGGG 
    AAAGGAGGGC CGGGTTTATC TGTAGAAGCT TTAGAGAAAA TGATGGAAGA 
    TCCAACAGTC CAGAAGATGG TTTACCCATA CTTGCCTGAG GAGATGAGGA 
    ACCCAGAAAC TTTCAAATGG ATGCTTAAAA ATCCTCAGTA CCGTCAACAA 
    CTACAGGACA TGTTGAATAA TATGAGTGGG AGTGGTGAAT GGGACAAGCG 
    AATGACAGAT ACATTGAAGA ATTTTGACCT GAATAGTCCT GAAGTGAAGC 
    AACAATTCAA TCAAATAGGA CTAACTCCAG AAGAAGTCAT ATCTAAGATC 
    ATGGAGAACC CTGATGTTGC CATGGCATTC CAGAATCCTA GAGTCCAAGC 
    AGCGTTAATG GAATGCTCAG AGAACCCAAT GAACATCATG AAGTACCAAA 
    ACGACAAAGA GGTAATGGAT GTGTTCAACA AGATATCGCA GCTCTTCCCA 
    GGAATGACGG GTTGAAAAAG CTCACGTCTT TGGTTCTATC AAAAATGTCA 
    CATTGTCTTT AGCTTTTTGT AGGGAGAAAA AAATGTTTTT TTTTTTTTGC 
    AAAGAGTCTT CAGTTTTGGT CAGATCAGAG AATTGTGTAC CATGTTAATC 
    TTAAACGCGG TCGGGAATTG GAGTCGTGTG AAAACGCCGC TGCTGTTGTT 
    TGGTATGAAT ATTATACAAT AGAATTTGTT GTCTTAC

    Gene models with high sequence identity

    1. AT5G16620.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther HSC70-INTERACTING PROTEIN 1.2e-12
    HMMPanther TPR REPEAT CONTAINING PROTEIN 1.2e-12
    HMMPfam 26S proteasome complex ubiquitin receptor, subunit Rpn13 8.2e-07
    HMMSmart Heat shock chaperonin-binding 0.0017
    HMMSmart Heat shock chaperonin-binding 3.4e-08

    See the detailed result >

    AT5G16620.1

    Model type
    Protein coding
    Short Description
    hydroxyproline-rich glycoprotein family protein
    Curator Summary
    chloroplast protein import (Tic40)
    Computational Description
    TIC40; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR