F27717

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27717

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27717

Determination of introduced cDNA(s)

  • RAFL09-89-I17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-I17 - Resource: pda06933

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-89-I17 - full reading 
    TGAAGAAAAC TTACAATATG GATTCAAAAA GAAAGAACCA AGAACTTAGC 
    ACATCAGAAA CCGCAGATCC CTCTCTCTCA AAGACGAATA AAAAGCAAAA 
    GATTGATATG CAAGAAGCGA TGAAGAACCA AAACGAGGTT TCTCTGTTAC 
    TTGTGGGGAA AGTAATCTCT GCCGTAGCCA AAAACTCAAA CTGTGTCTTC 
    TCTCCGGCAT CCATCAACGC CGTTCTCACC GTGACCGCTG CCAACACCGA 
    CAACAAAACA TTAAGATCTT TCATCCTCTC TTTTCTTAAG TCTTCTTCTA 
    CCGAAGAGAC CAACGCCATC TTCCACGAAC TCGCTTCCGT CGTCTTCAAA 
    GACGGAAGTG AAACAGGCGG GCCCAAAATT GCGGCGGTTA ATGGAGTGTG 
    GATGGAGCAA TCGCTTTCGT GTAACCCCGA CTGGGAAGAT CTGTTTCTGA 
    ACTTCTTCAA GGCTAGTTTC GCTAAAGTTG ATTTCCGACA CAAGGCTGAA 
    GAAGTGCGTC TGGACGTAAA TACGTGGGCT TCACGTCACA CCAATGATCT 
    CATCAAAGAA ATTCTTCCTC GTGGATCTGT TACAAGCCTA ACTAATTGGA 
    TATATGGAAA CGCCTTGTAC TTCAAGGGAG CTTGGGAAAA GGCATTCGAT 
    AAGTCCATGA CAAGAGATAA ACCATTTCAC CTTCTCAATG GCAAATCAGT 
    CTCTGTGCCT TTCATGAGAA GCTATGAGAA ACAATTCATA GAGGCTTATG 
    ATGGTTTCAA AGTCCTACGC CTTCCTTATC GACAAGGACG TGATGATACC 
    AACCGCGAGT TTTCGATGTA TCTCTATCTC CCTGACAAGA AAGGTGAACT 
    GGATAATCTT TTGGAGAGAA TAACATCTAA TCCTGGATTC TTGGATAGTC 
    ATATTCCGGA ATACCGCGTT GATGTTGGTG ATTTCAGAAT TCCAAAATTT 
    AAGATCGAAT TCGGGTTTGA AGCTTCAAGT GTTTTTAATG ACTTTGAGCT 
    TAATGTGTCA TTACACCAGA AAGCTTTGAT TGAGATCGAT GAAGAAGGTA 
    CTGAAGCTGC GGCTGCTACT ACTGTTGTAG TAGTAACCGG CAGCTGTTTG 
    TGGGAGCCGA AGAAGAAGAT AGATTTTGTG GCAGATCATC CATTTCTCTT 
    TTTGATTAGA GAAGACAAAA CCGGAACTCT TTTGTTCGCT GGTCAAATCT 
    TCGATCCTTC TGAACTTTCT TCTGCGTTGG ACCGGGCTTA ACCGGATAAG 
    GGTTTGGTAT TTTAGATTTA GTTCTTTTTA TAATTTTGGA CTATATTTTG 
    ATCAAACAAA GTTTGTTGGG TTTAGGGGTT TAATTTGATT CTGGTTGGTT 
    AAAGTTTTTG GAAAATGTTT AATGGATAGA ATCGAGATCA AACAAATTTT 
    GTTGGGTTTA GGGGTTTAAC TAGATTGGCG ATTGCTACTG ATGTCGTTAT 
    TGATGGAATG ATTTAAATAA ACAATTTAAA TAAATAATTT AAATTTCTCA 
    TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT2G14540.1 [+] show detail - serpin 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.8e-48
    HMMPfam Protease inhibitor I4, serpin 3.3e-78
    PatternScan Protease inhibitor I4, serpin 0
    HMMSmart Protease inhibitor I4, serpin 5.6e-49
    superfamily Protease inhibitor I4, serpin 9.8e-85
    HMMPanther Protease inhibitor I4, serpin, plant 8.2e-185
    HMMPanther Protease inhibitor I4, serpin 8.2e-185

    See the detailed result >

    AT2G14540.1

    Model type
    Protein coding
    Short Description
    serpin 2
    Computational Description
    serpin 2 (SRP2); FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: DNA repair, response to DNA damage stimulus; LOCATED IN: nucleus; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT1G62170.1); Has 6246 Blast hits to 6203 proteins in 468 species: Archae - 66; Bacteria - 371; Metazoa - 4782; Fungi - 10; Plants - 340; Viruses - 461; Other Eukaryotes - 216 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR