F27748

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27748

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27748

Determination of introduced cDNA(s)

  • RAFL14-67-F05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-67-F05 - Resource: pdz88483

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-67-F05 - 5 prime EST
    TCTCTCAACA ACTACTTGTT TAGAGAGAGT CCCACCACCA CCACTACCAC 
    AATCCCAATG GCTTCACCAA CTCTTACTCT CCTCCTCCTC CTCACCACCG
    TCTCCTTCTT CATCTCCTCC TCCGCAGATC CTGACATGCT TCAAGATCTC
    TGCGTCGCTG ATCTTCCCTC TGGAATCAAA ATCAATGGCT TCCCTTGCAA
    AGACGCAGCT ACAGTCACAT CAGCCGATTT CTTCTCACAA GGATTAGCTA
    AACCAGGTCT TACCAACAAC ACATTCGGTG CCTTAGTCAC AGGAGCTAAC
    GTTATGACAA TCCCAGGACT CAACACACTT GGTGTCTCCC TCTCTCGTAT
    CGACTACGCA CCAGGAGGCT TAAACCCACC TCACACCCAC CCACGTGCCA
    CTGAGGTCGT TTTCGTCCTC GAAGGAACAC TTGACGTTGG GTTTCTCACT
    ACTGCCAATA AGCTAATCTC TCAATCTCTC AAGAAAGGAG ATGTTTTTGC
    TTTNCCCNAA NGGACTTGTC CATTTCCAGA A

    Gene models with high sequence identity

    1. AT1G09560.1 [+] show detail - germin-like protein 5
      E-value: 0; Score: 99.25

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-67-F05 - 3 prime EST
    GAACAAAAAA TAATATGGAT TATACAAGAA GAGGAATACA TGAGACTATG 
    GAGCTCAAAT GCACACTGAA GATCATCAGC TTATTGTTCC TTTTTTATTA
    CAGAAGAAAA ATCAAAGAAG ATAAAAAGAT CTTCCCTTTA GAAAAAAACA
    GAACTGTAGT AATGAACTAT AAAGGAAGGG TGATGATCAT TTCTTGGGTT
    GGAACTTGGA TTTGATGTGT TTAAGAGTTC CTGGAGAAGT CTGAAAGGCT
    TGAGCCAAGA TGTTGTCAGG AACAGGAGGA GTAGAACCAA ACAAAGTAGC
    ACCAAGAGAT TGAGTTCCGG GAAGCTTGAC TATTGAAAGC TGGAATAACA
    GAAGCAGGGA CCCTCACCAT TGTTCTTCTG GAAATGGAAA AGTCCTTTGG
    GGAAAGCAAA ACATCTCCTT TCTTGAGAGA TTGAGAGAT

    Gene models with high sequence identity

    1. AT1G09560.1 [+] show detail - germin-like protein 5
      E-value: 0; Score: 97.27

    AT1G09560.1

    Model type
    Protein coding
    Short Description
    germin-like protein 5
    Curator Summary
    germin-like protein (GLP5)
    Computational Description
    germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR