F27839

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27839

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F27839

Determination of introduced cDNA(s)

  • RAFL16-73-B12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-73-B12 - Resource: pda10218

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-73-B12 - full reading 
    AATCTTCTCT CCACACAAAA TTCAAAAACC TCACATTTCA CTTCTCTCTT 
    CTCGCTTCTT CTAGATCTCA CCGGTTTATC TAGCTCCGGT TTGATTCATC 
    TCCGGTTATG GGGAGAGAAT GAGGAGTTAC CGTTTTAGTG ATTATCTACA 
    CATGTCTGTT TCATTCTCTA ACGATATGGA TTTGTTTTGT GGAGAAGACT 
    CCGGTGTGTT TTCCGGTGAG TCAACGGTTG ATTTCTCGTC TTCCGAGGTT 
    GATTCATGGC CTGGTGATTC TATCGCTTGT TTTATCGAAG ACGAGCGTCA 
    CTTCGTTCCT GGACATGATT ATCTCTCTAG ATTTCAAACT CGATCTCTCG 
    ATGCTTCCGC TAGAGAAGAT TCCGTCGCAT GGATTCTCAA GGTACAAGCG 
    TATTATAACT TTCAGCCTTT AACGGCGTAC CTCGCCGTTA ACTATATGGA 
    TCGGTTTCTT TACGCTCGTC GATTACCGGA AACGAGTGGT TGGCCAATGC 
    AACTTTTAGC AGTGGCATGC TTGTCTTTAG CTGCAAAGAT GGAGGAAATT 
    CTCGTTCCTT CTCTTTTTGA TTTTCAGGTT GCAGGAGTGA AGTATTTATT 
    TGAAGCAAAA ACTATAAAAA GAATGGAACT TCTTGTTCTA AGTGTGTTAG 
    ATTGGAGACT AAGATCGGTT ACACCGTTTG ATTTCATTAG CTTCTTTGCT 
    TACAAGATCG ATCCTTCGGG TACCTTTCTC GGGTTCTTTA TCTCCCATGC 
    TACAGAGATT ATACTCTCCA ACATAAAAGA AGCGAGCTTT CTTGAGTACT 
    GGCCATCGAG TATAGCTGCA GCCGCGATTC TCTGTGTAGC GAACGAGTTA 
    CCTTCTCTAT CCTCTGTTGT CAATCCCCAC GAGAGCCCTG AGACTTGGTG 
    TGACGGATTG AGCAAAGAGA AGATAGTGAG ATGCTATAGA CTGATGAAAG 
    CGATGGCCAT CGAGAATAAC CGGTTAAATA CACCAAAAGT GATAGCAAAG 
    CTTCGAGTGA GTGTAAGGGC ATCATCGACG TTAACAAGGC CAAGTGATGA 
    ATCCTCTTTC TCATCCTCTT CTCCTTGTAA AAGGAGAAAA TTAAGTGGCT 
    ATTCATGGGT AGGTGATGAA ACATCTACCT CTAATTAAAA TTTGGGGAGT 
    GAAAGTAGAG GACCAAGGAA ACAAAACCTA GAAGAAAAAA AACCCTCTTC 
    TGTTTAAGTA GAGTATATTT TTTAACAAGT ACATAGTAAT AAGGGAGTGA 
    TGAAGAAAAG TAAAAGTGTT TATTGGCTGA GTTAAAGTAA TTAAGAGTTT 
    TCCAACCAAG GGGAAGGAAT AAGAGTTTTG GTTACAATTT CTTTTATGGA 
    AAGGGTAAAA ATTGGGTTTT GGGGTTGGTT GGTTGGTTGG GAGAGACGAA 
    GCTCATCATT AATGGCTTTG CAGATTCCCA AGAAAGCAAA ATGAGTAAGT 
    GAGTGTAACA CACACGTGTT AGAGAAAAGA TATGATCATG TGAGTGTGTG 
    TGTGTGAGAG AGAGAGAGAA GAGTATTTGC ATTAGAGTCC TCATCACACA 
    GGTACTGATG GATAAGACAG GGGAGCGTTT GCAAAAGATT TGTGAGTGGA 
    GATTTTTCTG AGCTCTTTGT CTTAATGGAT CGCAGCAGTT CATGGGACCC 
    TTCCTCAGCT TCATCATCAA ACAAAAAAAA AATCAAGTTG CGAAGTATAT 
    ATAATTTGTT TTTTTGTTTG GATTTTTAAG ATTTTTGATT CCTTGTGTGT 
    GACTTCACGT GACGGAGGCG TGTGTCTCAC GTGTTTGTTT TCTCTTCAAA 
    TCTTTTATTT TGGCGGGAAA TTTTGTGTTT TTGATTTCTA CGTATTCGTG 
    GACTCCAAAT GAGTTTTGTC ACGGTGCGTT TTAGTAGCGT TTGCATGCGT 
    GTAAGGTGTC ACGTATGTGT ATATATATGA TTTTTTTTTG GTTTCTTGAA 
    AGGTTGAATT TTATAAATAA AACGTTTCTA TTATATGAAA AAAAAAAAAA 
    AAAAAAAAAG

    Gene models with high sequence identity

    1. AT1G70210.1 [+] show detail - CYCLIN D1;1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cyclin, N-terminal 4.5e-32
    HMMPfam Cyclin, C-terminal 2.9e-12
    Gene3D Cyclin-related 4.6e-27
    HMMPanther Cyclin D 3.1e-96
    HMMPanther CYCLINS 3.1e-96
    superfamily Cyclin-like 1.6e-37
    superfamily Multiheme cytochromes 5.3e-09
    PatternScan Cyclin, N-terminal 0
    HMMSmart Cyclin 3.5e-20

    See the detailed result >

    AT1G70210.1

    Model type
    Protein coding
    Short Description
    CYCLIN D1;1
    Curator Summary
    Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.
    Computational Description
    CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin D2;1 (TAIR:AT2G22490.1); Has 3455 Blast hits to 3453 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 1586; Fungi - 382; Plants - 1073; Viruses - 13; Other Eukaryotes - 401 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR