F27924

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27924

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27924

Determination of introduced cDNA(s)

  • RAFL06-16-A22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-A22 - Resource: pdz87601

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-16-A22 - 5 prime EST 
    GAACACTTCA CTAATCAATT ATTCAAAGCA GATAAAAAAA AAATGGCTCA 
    AGCAGTGACT TCGATGGCTG GCTTACNGTG GAGCATCTCA GGCTGTCCTT 
    GAAGGAAGTT TACAGATCAA CGGCTCAAAC CGTTTGAACA TCTCAAGAGT 
    CTCGGTTGGG TCTCAGAGAA CCGGACTTGT GATCAGGGCT CAGCAGAACG 
    TGTCAGTACC AGAAAGTAGT CGCCGGTCAG TGATTGGACT CGTGGCGGCT 
    GGTTTAGCCG GTGGTTCATT CGTTAAAGCT GTTTTCGCCG AAGCTATTCC 
    GATCAAAGTT GGTGGTCCTC CACTTCCTTC CGGTGGCCTA CCTGGAACAG 
    ATAACTCAGA CCAAGCAAGA GACTTTTCAT TGGCATTGAA AGATAGATTT 
    TACATACAAC CATTGTCACC AACAGAAGCT GCAGCTAGAG CCAAAGATTC 
    TGCTAAAGAG ATCATCAACG TTAAGTCATT TATCGACAAA AAAGCTTGGC 
    CCTATGTTCA GAACGATCTC CGTTTAAGAG CATCGTACCT CCGTTACGAT 
    CTCAACACCG TTATCTCCGC TAAGCCTAAG GAAGAGAAGC AAAGCCTTAA 
    AGATCTCACC GCAAAGCTTT TCCAAACCAT TGACAACTTG GACTATGCGG 
    NGAGATCAAA GAGTAGCCCA

    Gene models with high sequence identity

    1. AT4G05180.1 [+] show detail - photosystem II subunit Q-2
      E-value: 0; Score: 99.70

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-16-A22 - 3 prime EST 
    GGTTAAAACT TGAAACTGAA ATTAGAGATA ACCGATTTGA TCAGACAAGA 
    AGAGAAGGAG AAAGACAAAG TACTTGGATA GCAGTAATTA TAATAACATC 
    GACATCAACA GATTACAACG CAAGTCTTTC TTCATTAACC GAGCTTGGCA 
    AGAACATTGT TCAAACTCGA GACAGTTTCT GAGTAATACT TCTCAGCATC 
    TGGGCTACTC TTTGATCTCG CCGCATAGTC CAAGTTGTCA ATGGTTTGGA 
    AAAGCTTTGC GGTGAGATCT TTAAGGCTTT GCTTCTCTTC CTTAGGCTTA 
    GCGGAGATAA CGGTGTTGAG ATCGTAACGG AGGTACGATG CTCTTAAACG 
    GAGATCGTTC TGAACATAGG GCCAAGCTTT TTTGTCGATA AATGACTTAA 
    CGTTGATGAT CTCTTTAGCA GAATCTTTGG CTCTAGCTGC AGCTTCTGTT 
    GGTGACAATG GTTGTATGTA AAATCTATCT TTCAATGCCA ATGAAAAGTC 
    TCTTGCTTGG TCTGAGTTAT CTGTTCCAGG TAGGCCACCG GAAGGAAGTG 
    GAGGACCACC AACTTTGATC GGAATAGCTT CGGCGAAAAC AGCTTTAACG 
    AATGAACCAC CGGCTAAACC AGCCGCCACG AGTCCAATCA CTGACCGGCG 
    ACTACTTTCT GGTACTGACA CGTTCTGCTG AGCCCTGATC ACAAGTCC

    Gene models with high sequence identity

    1. AT4G05180.1 [+] show detail - photosystem II subunit Q-2
      E-value: 0; Score: 100.00

    AT4G05180.1

    Model type
    Protein coding
    Short Description
    photosystem II subunit Q-2
    Curator Summary
    Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.
    Computational Description
    photosystem II subunit Q-2 (PSBQ-2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.1); Has 206 Blast hits to 206 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR