F27927

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27927

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27927

Determination of introduced cDNA(s)

  • RAFL06-10-N03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-N03 - Resource: pda02992

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-N03 - full reading 
    AAAACAAACA AAAAATCTAG TGTTCGGCTC TAACACGCTC GACGACCATG 
    GCGGTCTCGT TTAATACAAC GCTTCACCAG CCTTCTCTGA GTCCGAGCTG 
    TAGCATCAAG CTTTATTCTG GGTTAAAGCC TCAATCTGCA AGCTTTTTGG 
    CAAGTGGGTA TCAGAATTTG AACAAGGAGT TCTATGGAAG AGTTTATAAG 
    AGTCTGCAAT CTGGGACTGG GAAAGCGAGC AGGTCACGGG TAAAGATGAT 
    GCCAATAGGA ACACCGAGAG TACCCTACAG AAACCGAGAA GAAGGGACTT 
    GGCAATGGGT TGATATATGG AATGCCCTTT ATCGAGAGCG TGTAATCTTC 
    ATTGGACAAA ACATTGATGA AGAGTTTAGC AACCAGATAT TAGCAACCAT 
    GTTGTACCTT GATACTCTTG ATGACTCGAG GAGGATTTAT ATGTACCTAA 
    ATGGTCCGGG TGGTGATCTT ACTCCAAGTC TAGCCATCTA TGATACAATG 
    AAGAGCTTGA AAAGTCCGGT TGGGACACAT TGCGTTGGGC TTGCTTACAA 
    CCTTGCAGGT TTTCTTCTTG CGGCTGGAGA AAAGGGTCAC CGATTTGCGA 
    TGCCATTATC AAGAATCGCC CTCCAGTCAC CAGCTGGTGC AGCCCGTGGT 
    CAGGCTGATG ATATCCAAAA TGAAGCAAAA GAGCTTTCAA GGATAAGAGA 
    CTACCTCTTC AATGAACTAG CCAAGAATAC AGGCCAGCCT GCGGAAAGGG 
    TCTTCAAAGA CTTGAGCCGG GTGAAAAGGT TCAATGCAGA GGAAGCAATC 
    GAGTATGGAC TTATTGATAA GATTGTTAGA CCACCGCGCA TCAAAGAAGA 
    CGCTCCTCGC CAAGACGAAA GCGCAGGGCT AGGCTAGTCT TTTTGTTTGT 
    TTGTTATGTC AAAAGTTTTA ATCTTTATGT TATTGTGATT GTTACCTAAT 
    AAAATCACTG ATTATTGT

    Gene models with high sequence identity

    1. AT1G12410.1 [+] show detail - CLP protease proteolytic subunit 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase S14, ClpP 1.4e-62
    FPrintScan Peptidase S14, ClpP 4.4e-33
    FPrintScan Peptidase S14, ClpP 4.4e-33
    FPrintScan Peptidase S14, ClpP 4.4e-33
    FPrintScan Peptidase S14, ClpP 4.4e-33
    FPrintScan Peptidase S14, ClpP 4.4e-33
    superfamily ClpP/crotonase 2.1e-43
    HMMPanther Peptidase S14, ClpP 9.1e-66
    Gene3D no description 3.2e-55
    HAMAP CLPP_MF_00444 32.857

    See the detailed result >

    AT1G12410.1

    Model type
    Protein coding
    Short Description
    CLP protease proteolytic subunit 2
    Curator Summary
    Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
    Computational Description
    CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR