F27933

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27933

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27933

Determination of introduced cDNA(s)

  • RAFL05-10-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-M11 - Resource: pda02493

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-M11 - full reading 
    GAAATCGAGT CTCCTCTTAT TCGACGACCT GCCCCAACTA TAAACATGAC 
    TTTTACACAC TTGACATAAC TTCGTTTGTA TCGCTTTTTT GAAATTCTAT 
    ATATTATTAT TGTTTGAGCA GAAACTAAGA CAAAATTAAG ACTTTTCTCT 
    CTTCTTCTTC TCCACTGGGT CGATCTTTAC GAGGTTCACT TGTACGGATT 
    CACTTTAACA ACAGATTCGC CATGGCCGCC GCCGTCGCAG CACCGAGACT 
    CATCTCCTTG AAAGCCGTCG CGAAGCTAGG TTTCCGTGAG ATCTCTCAAA 
    TCCGACAATT GGCTCCGCTT CACTCTGCGA TACCTCATTT CGGAATGCTG 
    CGATGTAGAT CGCGGCAGCC GTTTTCTACC TCTGTTGTGA AAGCTCAAGC 
    TACTGCTACT GAGCAATCAC CAGGGGAAGT TGTTCAAAAA GTGGAATCTC 
    CAGTGGTCGT TATCACTGGT GCCTCGAGAG GGATTGGTAA AGCAATTGCT 
    CTAGCCTTGG GTAAAGCTGG CTGCAAGGTC TTGGTGAATT ATGCTAGGTC 
    AGCAAAAGAG GCTGAAGAAG TTGCTAAACA GATTGAAGAA TATGGTGGCC 
    AGGCTATCAC TTTTGGGGGT GATGTCTCGA AAGCGACTGA TGTGGATGCG 
    ATGATGAAAA CCGCTCTTGA CAAATGGGGA ACCATTGATG TTGTGGTTAA 
    CAATGCAGGA ATTACTCGGG ATACCTTGTT AATACGAATG AAGCAATCAC 
    AATGGGACGA AGTGATTGCT TTGAATCTCA CTGGTGTATT TCTCTGTACT 
    CAGGCAGCAG TAAAGATCAT GATGAAGAAA AAAAGGGGAA GAATCATCAA 
    TATCTCGTCA GTTGTTGGTC TCATTGGTAA TATTGGTCAA GCAAACTACG 
    CAGCGGCTAA AGGTGGAGTT ATTTCGTTTT CCAAGACTGC TGCCAGAGAA 
    GGTGCGAGCA GGAATATAAA TGTCAATGTG GTTTGCCCCG GATTCATTGC 
    ATCTGACATG ACTGCAGAGC TTGGAGAAGA CATGGAAAAG AAAATCCTGG 
    GAACAATCCC ATTAGGACGG TATGGAAAAG CTGAAGAAGT GGCTGGCTTG 
    GTAGAATTCT TGGCTCTCAG TCCTGCAGCC AGTTACATAA CCGGACAGGC 
    ATTCACCATT GATGGAGGTA TTGCTATCTA GACATTTGGT ATGAGTCGGC 
    TTTTGTTTAG TTAAAACAAT TTGGTAAAAG AGACAAAGTT GAGTTCTTTT 
    TAGCACTTGG TCGGATTGCT ATTTTGCGGT TTCTGTTAAG AAATATGTAA 
    CACTTACTGC TTAAACTACG TATTTGGTCA CTTTCAGAAA CTAGAAATCG 
    ATTAATC

    Gene models with high sequence identity

    1. AT1G24360.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr 3-oxoacyl-(acyl-carrier-protein) reductase 4.9e-157
    FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
    FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
    FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
    FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
    FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
    FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
    FPrintScan Short-chain dehydrogenase/reductase SDR 5.8e-14
    FPrintScan Short-chain dehydrogenase/reductase SDR 5.8e-14
    FPrintScan Short-chain dehydrogenase/reductase SDR 5.8e-14
    HMMSmart Polyketide synthase/Fatty acid synthase, KR 1.4e-05
    superfamily NAD(P)-binding domain 1e-83
    HMMPfam Short-chain dehydrogenase/reductase SDR 5.3e-43
    PatternScan Short-chain dehydrogenase/reductase, conserved site 0
    Gene3D NAD(P)-binding domain 1.8e-79
    HMMPanther 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 2.8e-154
    HMMPanther Short-chain dehydrogenase/reductase SDR 2.8e-154

    See the detailed result >

    AT1G24360.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: 3-oxoacyl-[acyl-carrier-protein] reductase activity, copper ion binding; INVOLVED IN: oxidation reduction, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxoacyl-(acyl-carrier-protein) reductase (InterPro:IPR011284), Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29370.1); Has 133396 Blast hits to 132816 proteins in 3924 species: Archae - 1008; Bacteria - 83642; Metazoa - 7884; Fungi - 7548; Plants - 3127; Viruses - 5; Other Eukaryotes - 30182 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR