F27936

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27936

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27936

Determination of introduced cDNA(s)

  • RAFL06-11-J16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-J16 - Resource: pda03082

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-11-J16 - full reading 
    CTCAGCAGCT TCTTCTGCTT TCAATTACTC TCGCCGACGA TTTTCTCACC 
    GGAAAAAAAC AATATCATTG CGGATACACA AACTATAATG GACCTCCTCT 
    TGCTGGAGAA GTCTTTAATC GCCGTCTTCG TGGCGGTGAT TCTCGCCACG 
    GTGATTTCAA AGCTCCGCGG CAAGAAATTG AAGCTACCTC CAGGTCCTAT 
    ACCAATTCCG ATCTTCGGAA ACTGGCTTCA AGTCGGAGAT GATCTCAACC 
    ACCGTAATCT CGTCGATTAC GCTAAGAAAT TCGGCGATCT CTTCCTCCTC 
    CGTATGGGTC AGCGAAACCT AGTCGTCGTC TCCTCACCGG ATCTAACAAA 
    GGAAGTGCTC CTCACTCAAG GCGTTGAGTT TGGATCCAGA ACGAGAAACG 
    TCGTGTTCGA CATTTTCACC GGGAAAGGTC AAGATATGGT GTTCACTGTT 
    TACGGCGAGC ATTGGAGGAA GATGAGAAGA ATCATGACGG TTCCTTTCTT 
    CACCAACAAA GTTGTTCAAC AGAATCGTGA AGGTTGGGAG TTTGAAGCAG 
    CTAGTGTTGT TGAAGATGTT AAGAAGAATC CAGATTCTGC TACGAAAGGA 
    ATCGTGTTGA GGAAACGTTT GCAATTGATG ATGTATAACA ATATGTTCCG 
    TATCATGTTC GATAGAAGAT TTGAGAGTGA GGATGATCCT CTTTTCCTTA 
    GGCTTAAGGC TTTGAATGGT GAGAGAAGTC GATTAGCTCA GAGCTTTGAG 
    TATAACTATG GAGATTTCAT TCCTATCCTT AGACCATTCC TCAGAGGCTA 
    TTTGAAGATT TGTCAAGATG TGAAAGATCG AAGAATCGCT CTTTTCAAGA 
    AGTACTTTGT TGATGAGAGG AAGCAAATTG CGAGTTCTAA GCCTACAGGT 
    AGTGAAGGAT TGAAATGTGC CATTGATCAC ATCCTTGAAG CTGAGCAGAA 
    GGGAGAAATC AACGAGGACA ATGTTCTTTA CATCGTCGAG AACATCAATG 
    TCGCCGCGAT TGAGACAACA TTGTGGTCTA TCGAGTGGGG AATTGCAGAG 
    CTAGTGAACC ATCCTGAAAT CCAGAGTAAG CTAAGGAACG AACTCGACAC 
    AGTTCTTGGA CCGGGTGTGC AAGTCACCGA GCCTGATCTT CACAAACTTC 
    CATACCTTCA AGCTGTGGTT AAGGAGACTC TTCGTCTGAG AATGGCGATT 
    CCTCTCCTCG TGCCTCACAT GAACCTCCAT GATGCGAAGC TCGCTGGCTA 
    CGATATCCCA GCAGAAAGCA AAATCCTTGT TAATGCTTGG TGGCTAGCAA 
    ACAACCCCAA CAGCTGGAAG AAGCCTGAAG AGTTTAGACC AGAGAGGTTC 
    TTTGAAGAAG AATCGCACGT GGAAGCTAAC GGTAATGACT TCAGGTATGT 
    GCCATTTGGT GTTGGACGTC GAAGCTGTCC CGGGATTATA TTGGCATTGC 
    CTATTTTGGG GATCACCATT GGTAGGATGG TCCAGAACTT CGAGCTTCTT 
    CCTCCTCCAG GACAGTCTAA AGTGGATACT AGTGAGAAAG GTGGACAATT 
    CAGCTTGCAC ATCCTTAACC ACTCCATAAT CGTTATGAAA CCAAGGAACT 
    GTTAAACTTT CTGCACAAAA AAAAGGATGA AGATGACTTT ATAAATGTTT 
    GTGAAATCTG TTGAAATATT CCCTTGTTTT GCTTTTGTGA GATGTTTTTG 
    TGTAAAATGT CTTTAAATGG TTCGTTCTAC GATTGCAATA ATAATTAGTG 
    GTGCTCATTG TTTTGGATGG ATCAATGTTA TACTTATATC ATTT

    Gene models with high sequence identity

    1. AT2G30490.1 [+] show detail - cinnamate-4-hydroxylase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, E-class, group I 2.5e-56
    FPrintScan Cytochrome P450, C-terminal 3.1e-07
    FPrintScan Cytochrome P450, C-terminal 3.1e-07
    FPrintScan Cytochrome P450, C-terminal 3.1e-07
    superfamily Cytochrome P450 4.4e-114
    HMMPanther CINNAMATE 4-HYDROXYLASE 0
    HMMPanther Cytochrome P450 0
    PatternScan Cytochrome P450, conserved site 0
    HMMPfam Cytochrome P450 7.3e-112
    Gene3D Cytochrome P450 1.7e-105

    See the detailed result >

    AT2G30490.1

    Model type
    Protein coding
    Short Description
    cinnamate-4-hydroxylase
    Curator Summary
    Encodes a cinnamate-4-hydroxylase. Mutations in this gene impact phenylpropanoid metabolism, growth and development.
    Computational Description
    cinnamate-4-hydroxylase (C4H); FUNCTIONS IN: trans-cinnamate 4-monooxygenase activity; INVOLVED IN: in 9 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 98, subfamily A, polypeptide 3 (TAIR:AT2G40890.1); Has 31278 Blast hits to 31002 proteins in 1609 species: Archae - 48; Bacteria - 2734; Metazoa - 11804; Fungi - 6596; Plants - 9113; Viruses - 3; Other Eukaryotes - 980 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR