F27946

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) decreased thickness (PATO:0000592) (Stem::Shape::thin) present in fewer numbers in organism (PATO:0001997) (Stem::Number::few) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27946

Determination of introduced cDNA(s)

RAFL06-67-P21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-P21 - Resource: pda03286

full reading [+] show sequence

ACAAGCCCTA CAACAACCAC AAAGCAAAAC ACTTACTTAG AAAGTCCAGA 
AACATCCATT AACACATATG GCTAAAGACG TGGAAGGACC TGATGGATTT 
CAGACGAGAG ATTACGAAGA TCCTCCGCCA ACACCGTTTT TCGACGCAGA 
GGAGCTTACC AAGTGGTCTT TATACAGAGC AGTCATCGCC GAGTTCGTAG 
CCACTCTCCT CTTCTTGTAC GTCACCGTTT TAACTGTCAT TGGTTACAAG 
ATTCAGTCCG ACACAAAAGC CGGTGGAGTT GACTGCGGCG GCGTCGGAAT 
CCTTGGCATC GCGTGGGCTT TTGGTGGCAT GATCTTCATC CTTGTCTACT 
GCACCGCCGG TATCTCAGGT GGTCACATAA ACCCTGCGGT GACGTTTGGT 
TTGTTCTTAG CCCGGAAGGT ATCGCTGATT AGGGCGGTGC TTTACATGGT 
GGCTCAGTGT TTGGGTGCTA TTTGTGGAGT TGGGTTTGTG AAGGCATTTC 
AAAGCTCTCA CTATGTTAAT TACGGTGGAG GAGCCAACTT TCTAGCTGAC 
GGCTACAATA CAGGCACCGG ACTCGCGGCA GAGATCATCG GAACATTCGT 
GCTTGTCTAC ACAGTCTTCT CCGCTACTGA TCCCAAACGC AACGCTAGAG 
ACTCCCACGT TCCGGTTTTG GCGCCACTTC CGATTGGGTT TGCGGTGTTT 
ATGGTACATT TGGCCACTAT TCCGATCACC GGAACCGGTA TCAACCCGGC 
TAGGAGTTTC GGAGCCGCCG TAATCTTTAA CAAGAGCAAG CCATGGGATG 
ACCACTGGAT ATTCTGGGTG GGACCATTCA TTGGAGCTAC GATAGCTGCA 
TTTTATCACC AATTCGTTCT AAGGGCCTCA GGCTCCAAGT CCCTCGGTTC 
ATTCAGAAGT GCAGCCAACG TTTAAACTTA GCCACGAAAG AAAAAAAGTG 
TGCCTACAAT TATGTAGAAA CATATCCTCT TTTCCACTCG TATCTTAGCT 
TCTTCCTATT TTCTATTTCT AACTGTGTGA TTCCATATTA AATCGAGTGA 
AATGTTTTTC AATTCATCTT TGCAACGTAT GTAAGTTTGG TGTATTGAGA 
AAAAAAAATC GAGAAAGACA ACTTTTTCTT CGATTAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

AT2G37180.1 [+] show detail - Aquaporin-like superfamily protein
E-value: 0; Score: 99.91

InterPro Scan Digest

Program	Description	E-value
Gene3D	Major intrinsic protein	4.6e-65
HMMTigr	Aquaporin	3.3e-92
PatternScan	Major intrinsic protein, conserved site	0
HMMPanther	AQUAPORIN-RELATED	6.9e-191
HMMPanther	Major intrinsic protein	6.9e-191
FPrintScan	Major intrinsic protein	2.1e-70
FPrintScan	Major intrinsic protein	2.1e-70
FPrintScan	Major intrinsic protein	2.1e-70
FPrintScan	Major intrinsic protein	2.1e-70
FPrintScan	Major intrinsic protein	2.1e-70
FPrintScan	Major intrinsic protein	2.1e-70
superfamily	Major intrinsic protein	3.5e-62
HMMPfam	Major intrinsic protein	1.7e-86

See the detailed result >

AT2G37180.1

Model type: Protein coding
Short Description: Aquaporin-like superfamily protein
Curator Summary: a member of the plasma membrane intrinsic protein PIP2. functions as aquaporin and is involved in dessication.
Computational Description: RESPONSIVE TO DESICCATION 28 (RD28); FUNCTIONS IN: water channel activity; INVOLVED IN: response to desiccation, response to water deprivation, transport, response to osmotic stress; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: shoot, root, flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10809 Blast hits to 10795 proteins in 2215 species: Archae - 81; Bacteria - 5139; Metazoa - 1474; Fungi - 455; Plants - 2518; Viruses - 2; Other Eukaryotes - 1140 (source: NCBI BLink).
Link: InterPro Scan - TAIR