F27947

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27947

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased width (PATO:0000600)
    (Cauline leaf::Shape::wide)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
T2  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27947

Determination of introduced cDNA(s)

  • RAFL07-10-D02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-10-D02 - Resource: pda09501

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-10-D02 - full reading 
    GAGCAGCCGC GCTTTTTGGC CGAGGAAGGA TAAAGAGAGA CGCCATGGGA 
    AGAAGACCTG CGAGGTGTTA CCGTCAGATC AAGGGTAAGC CATACCCAAA 
    GTCTCGCTAC TGTCGTGGTG TGCCAGATCC AAAAATCAGG ATCTACGATG 
    TTGGTATGAA GAGGAAGGGT GTTGATGAGT TTCCATTCTG TGTCCATTTG 
    GTGTCATGGG AGAAGGAGAA TGTGTCAAGT GAAGCACTTG AAGCTGCCCG 
    TATTGCTTGC AACAAGTACA TGGTGAAGTC TGCTGGAAAA GATGCTTTTC 
    ATTTGAGGAT TAGGGTTCAT CCTTTCCATG TTCTCAGGAT TAACAAGATG 
    CTTTCGTGTG CTGGAGCTGA TAGGCTTCAG ACTGGTATGA GAGGTGCTTT 
    TGGTAAAGCT TTGGGTACTT GTGCTCGTGT TGCTATTGGA CAGGTTCTTT 
    TGTCTGTTCG TTGCAAGGAT GCCCATGGTC ACCATGCTCA AGAGGCTCTT 
    CGTCGTGCTA AGTTCAAGTT CCCTGGTCGT CAAAAGATTA TTGTCAGCAG 
    GAAATGGGGC TTCACGAAGT TTAACAGAGC TGACTTCACC AAGTTGAGGC 
    AAGAGAAGCG TGTTGTCCCT GATGGTGTCA ACGCTAAGTT CCTCTCATGC 
    CATGGACCTT TGGCTAACCG TCAGCCGGGA AGTGCCTTTT TGCCAGCCCA 
    CTACTGAAGA GTATCAGAAC TGAAGTATCC TTCTCATTCC GGTGAAGAAG 
    AATTATAATC AGCCTGAATC TTTTTACTTA TCGTTATCTC TGGTGTTGTT 
    TTAAGTTTTT AGTTGGACAC AATCAGTATT CTGAATCTTT TTGTGACTCT 
    TTTGTTTAAG CTCTGAAATG ATTTTGTTCC TTCGTTCTTG GCCATATATC 
    TTCCAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G14320.1 [+] show detail - Ribosomal protein L16p/L10e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L10e 8.6e-82
    HMMPfam Ribosomal protein L10e/L16 3.8e-31
    superfamily Ribosomal protein L10e/L16 5.5e-80
    HMMPanther 60S RIBOSOMAL PROTEIN L10 3.5e-169
    HMMPanther Ribosomal protein L10e 3.5e-169
    Gene3D no description 1.3e-76
    HMMPIR Ribosomal protein L10e 1.1e-145
    PatternScan Ribosomal protein L10e, conserved site 0

    See the detailed result >

    AT1G14320.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L16p/L10e family protein
    Curator Summary
    Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.
    Computational Description
    SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1679 Blast hits to 1677 proteins in 606 species: Archae - 325; Bacteria - 13; Metazoa - 562; Fungi - 162; Plants - 159; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR