F28012

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28012

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28012

Determination of introduced cDNA(s)

  • RAFL05-15-H17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-H17 - Resource: pdz87493

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-H17 - 5 prime EST 
    TGGAGAGAGA GAGAAGCATC CCAGAAAACG ACATTCTGTT CATATGGAGT 
    TTTTTCACCA GATCGAGAGC ACGAAGAAGA TGATTACNTG GGTTTTGATT 
    TAGTCGGCGA AAANTCCGTA ATCTCATTGT TCGTGATCTC TGGGTTGTTT 
    TTCTGGATTG CTGGTGCGGC TGATTCTAGT CAGGATTGTT TTTGGGGTCC 
    CTTTCGCTCT ATTTGAATCT GCGTCTGGGT TGTTAAGATT GTACAAGGGG 
    TTTCGTGGTT ATTTATGGAA CCTCGTGTGG GGAACAAGTT TCGTCTCGGC 
    CGAAAGATCG GTAGTGGNTC GTTTGGAGAG ATCTATCTCG GTACTAATAT 
    TCATACGAAT GAAGAACTGG CTATTAAGCT

    Gene models with high sequence identity

    1. AT4G26100.1 [+] show detail - casein kinase 1
      E-value: 0; Score: 99.21

    AT4G26100.1

    Model type
    Protein coding
    Short Description
    casein kinase 1
    Curator Summary
    Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization.
    Computational Description
    casein kinase 1 (CK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 12 (TAIR:AT5G57015.1); Has 62578 Blast hits to 62222 proteins in 2324 species: Archae - 33; Bacteria - 9966; Metazoa - 23829; Fungi - 6469; Plants - 10923; Viruses - 370; Other Eukaryotes - 10988 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR