F28030

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28030

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
T2 cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28030

Determination of introduced cDNA(s)

  • RAFL09-24-E12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-24-E12 - Resource: pda08064

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-24-E12 - full reading 
    AGGCGTTTAA GCCATAGATA ACAAACCAAA CTAAAAAAAA AAAGTTTCTC 
    CTTTTATCAT TCCTTCTCTT CCCTTGTATA GGTGTGATCC TCTTCAAGGG 
    GATTTCTCTG GCGGGTCATA CATTCGCACC GATCAAAGTC GGATTGGTCT 
    TTCTTAACGC AATCTTGACC CGATTCAAAA AATTTCTGGG TTTGTTAGTG 
    AATAGATAAG AAGATAAATG GGAGCTCCGT TAGTGTGCCA CGGGCATTCT 
    CGTCCCGTCG TCGATGTGGC TTATAGTCCG GTGACTCCAG ATGGGTTCTT 
    TCTCATTAGC GCCAGCAAAG ATTCGAATCC GATGTTGAGG AATGGAGAGA 
    CTGGTGACTG GATTGGGACT TTTGAAGGAC ATAAGGGAGC AGTTTGGAGT 
    TGCAGCCTTG ATAAAAATGC TATTCGTGCT GCCTCAGCTT CTGCTGATTT 
    CACTGCGAAA ATATGGAATG CATTGACAGG AGATGAATTG CACTCCTTTG 
    AACACAAGCA CATTGTTCGT GCATGTGCCT TTTCTGAGGA CACTCACCGT 
    TTACTCACTG GTGGAATGGA GAAAATACTT CGGATATTCG ATTTGAATCG 
    GCCAGACGCA CCTCCAAAAG AAGTCGGGAA TTCCCCTGGT TCAATTAGAA 
    CTGTCGAATA GCTTCATAGT GATAATACAA TCTTAAGCTC TTGCACAGAT 
    ACCGGTGACA TTAGGTTATG GGACATAAGA AGTGACAAGA TTGTTCATAC 
    ATTAGAAACA AAGTCCCCAG TTACTAGTGC TGAAGTAAGT CAGGATGGGC 
    GATACATCAC TACTGCTGAT GGATCTAGTG TTAAGTTTTG GGACGCTAAA 
    AATTTTGGAT TGCTGAAGAG CTATGACATG CCTTGCAATG TTGAATCGGC 
    ATCGTTGGAA CCGAAACACG GTAACACTTT CATTGCTGGA GGAGAAGATA 
    TGTGGGTGCA CAGGTTTGAT TTCCAGACTG GAGAAGAGAT TGGGTGTAAC 
    AAGGGTCATC ACGGGCCAGT GCACTGCGTG AGGTATGCGC CAGGAGGGGA 
    GTCATACACC TCAGGCTCAG AAGACGGAAC GGTCAGAATA TGGGTGGTGG 
    GTTCGGTAAA CCATCCTGAG GAGAGCAATC TAAGCGGCCA CGTGAAGCTT 
    GTGGCAGAGG AGGTTGTGCG TAAAGCTGAA AGTCTCCGTA TCAGTGAGAA 
    AGCCGCAGAA GCTAAATGAA ACACCATCGT TAGCTTATGA TATCACATAG 
    ATTCATAGTT GTTTTTGCAT CATTATAAGA TGTGACAAAG GGGTTTTGCC 
    TTTTAAAAGT CTCTCAGACC GAATAAAACG AAATAATCTT CAACTATACT 
    TGAGTGAATA GTGAATCTAA TCCAAATTTT GACAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G15470.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 11.21
    ProfileScan WD40-repeat-containing domain 14.292
    ProfileScan WD40 repeat 2 9.84
    ProfileScan WD40 repeat 2 13.349
    ProfileScan WD40-repeat-containing domain 18.22
    HMMSmart WD40 repeat 60
    HMMSmart WD40 repeat 2.3e-05
    HMMSmart WD40 repeat 5.5e-05
    HMMSmart WD40 repeat 0.0033
    HMMSmart WD40 repeat 220
    HMMSmart WD40 repeat 1.8e-05
    superfamily WD40 repeat-like-containing domain 4.5e-25
    superfamily WD40 repeat-like-containing domain 4.8e-33
    Gene3D WD40/YVTN repeat-like-containing domain 3.2e-24
    Gene3D WD40/YVTN repeat-like-containing domain 1.6e-28
    PatternScan WD40 repeat, conserved site 0
    HMMPanther SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P 6e-94
    HMMPanther WD40 REPEAT PROTEIN 6e-94
    HMMPanther SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P 3.2e-68
    HMMPanther WD40 REPEAT PROTEIN 3.2e-68
    HMMPfam WD40 repeat, subgroup 0.005
    HMMPfam WD40 repeat, subgroup 1.5e-06
    HMMPfam WD40 repeat, subgroup 0.00011
    HMMPfam WD40 repeat, subgroup 0.02
    HMMPfam WD40 repeat, subgroup 1.7e-07

    See the detailed result >

    AT1G15470.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64; Bacteria - 7048; Metazoa - 15440; Fungi - 9730; Plants - 4355; Viruses - 0; Other Eukaryotes - 5016 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR