F28030

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) desaturated green (PATO:0001272) (Cauline leaf::Color::pale)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag)
T2	cauline leaf (PO:0000013)	hyponastic (PATO:0002329) (Cauline leaf::Shape::hyponastic)
T2	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) increased width (PATO:0000600) (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28030

Determination of introduced cDNA(s)

RAFL09-24-E12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-24-E12 - Resource: pda08064

full reading [+] show sequence

AGGCGTTTAA GCCATAGATA ACAAACCAAA CTAAAAAAAA AAAGTTTCTC 
CTTTTATCAT TCCTTCTCTT CCCTTGTATA GGTGTGATCC TCTTCAAGGG 
GATTTCTCTG GCGGGTCATA CATTCGCACC GATCAAAGTC GGATTGGTCT 
TTCTTAACGC AATCTTGACC CGATTCAAAA AATTTCTGGG TTTGTTAGTG 
AATAGATAAG AAGATAAATG GGAGCTCCGT TAGTGTGCCA CGGGCATTCT 
CGTCCCGTCG TCGATGTGGC TTATAGTCCG GTGACTCCAG ATGGGTTCTT 
TCTCATTAGC GCCAGCAAAG ATTCGAATCC GATGTTGAGG AATGGAGAGA 
CTGGTGACTG GATTGGGACT TTTGAAGGAC ATAAGGGAGC AGTTTGGAGT 
TGCAGCCTTG ATAAAAATGC TATTCGTGCT GCCTCAGCTT CTGCTGATTT 
CACTGCGAAA ATATGGAATG CATTGACAGG AGATGAATTG CACTCCTTTG 
AACACAAGCA CATTGTTCGT GCATGTGCCT TTTCTGAGGA CACTCACCGT 
TTACTCACTG GTGGAATGGA GAAAATACTT CGGATATTCG ATTTGAATCG 
GCCAGACGCA CCTCCAAAAG AAGTCGGGAA TTCCCCTGGT TCAATTAGAA 
CTGTCGAATA GCTTCATAGT GATAATACAA TCTTAAGCTC TTGCACAGAT 
ACCGGTGACA TTAGGTTATG GGACATAAGA AGTGACAAGA TTGTTCATAC 
ATTAGAAACA AAGTCCCCAG TTACTAGTGC TGAAGTAAGT CAGGATGGGC 
GATACATCAC TACTGCTGAT GGATCTAGTG TTAAGTTTTG GGACGCTAAA 
AATTTTGGAT TGCTGAAGAG CTATGACATG CCTTGCAATG TTGAATCGGC 
ATCGTTGGAA CCGAAACACG GTAACACTTT CATTGCTGGA GGAGAAGATA 
TGTGGGTGCA CAGGTTTGAT TTCCAGACTG GAGAAGAGAT TGGGTGTAAC 
AAGGGTCATC ACGGGCCAGT GCACTGCGTG AGGTATGCGC CAGGAGGGGA 
GTCATACACC TCAGGCTCAG AAGACGGAAC GGTCAGAATA TGGGTGGTGG 
GTTCGGTAAA CCATCCTGAG GAGAGCAATC TAAGCGGCCA CGTGAAGCTT 
GTGGCAGAGG AGGTTGTGCG TAAAGCTGAA AGTCTCCGTA TCAGTGAGAA 
AGCCGCAGAA GCTAAATGAA ACACCATCGT TAGCTTATGA TATCACATAG 
ATTCATAGTT GTTTTTGCAT CATTATAAGA TGTGACAAAG GGGTTTTGCC 
TTTTAAAAGT CTCTCAGACC GAATAAAACG AAATAATCTT CAACTATACT 
TGAGTGAATA GTGAATCTAA TCCAAATTTT GACAAAAAAA AAAAAAAAA

Gene models with high sequence identity

AT1G15470.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
ProfileScan	WD40 repeat 2	11.21
ProfileScan	WD40-repeat-containing domain	14.292
ProfileScan	WD40 repeat 2	9.84
ProfileScan	WD40 repeat 2	13.349
ProfileScan	WD40-repeat-containing domain	18.22
HMMSmart	WD40 repeat	60
HMMSmart	WD40 repeat	0.000023
HMMSmart	WD40 repeat	0.000055
HMMSmart	WD40 repeat	0.0033
HMMSmart	WD40 repeat	220
HMMSmart	WD40 repeat	0.000018
superfamily	WD40 repeat-like-containing domain	4.5e-25
superfamily	WD40 repeat-like-containing domain	4.8e-33
Gene3D	WD40/YVTN repeat-like-containing domain	3.2e-24
Gene3D	WD40/YVTN repeat-like-containing domain	1.6e-28
PatternScan	WD40 repeat, conserved site	0
HMMPanther	SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P	6e-94
HMMPanther	WD40 REPEAT PROTEIN	6e-94
HMMPanther	SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P	3.2e-68
HMMPanther	WD40 REPEAT PROTEIN	3.2e-68
HMMPfam	WD40 repeat, subgroup	0.005
HMMPfam	WD40 repeat, subgroup	0.0000015
HMMPfam	WD40 repeat, subgroup	0.00011
HMMPfam	WD40 repeat, subgroup	0.02
HMMPfam	WD40 repeat, subgroup	0.00000017

See the detailed result >

AT1G15470.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64; Bacteria - 7048; Metazoa - 15440; Fungi - 9730; Plants - 4355; Viruses - 0; Other Eukaryotes - 5016 (source: NCBI BLink).
Link: InterPro Scan - TAIR