F28042

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28042

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28042

Determination of introduced cDNA(s)

  • RAFL09-16-M04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-M04 - Resource: pda01912

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-16-M04 - full reading 
    ATCTCTACAC TTCTCATCTC TCAATCCCAT TCGCTTATTA TTTATCCATA 
    TGGGAAAGGT TCTTGAGAAG GAGGCGTTTG GATTGGCTGC GAAAGACGAA 
    TCGGGAATTC TTTCGCCTTT CAGTTTCTCT AGAAGGGCGA CGGGTGAAAA 
    GGATGTGAGG TTCAAAGTCT TGTTCTGTGG AATTTGCCAC ACTGATCTGA 
    GTATGGCCAA AAACGAATGG GGGTTAACTA CTTATCCTCT TGTCCCTGGG 
    CATGAGATTG TGGGCGTGGT GACTGAAGTT GGAGCCAAAG TGAAAAAATT 
    CAACGCTGGA GACAAAGTCG GAGTTGGCTA TATGGCCGGC TCGTGCAGGT 
    CATGTGACAG CTGCAATGAT GGCGACGAGA ACTACTGTCC AAAGATGATC 
    TTAACGTCCG GAGCCAAAAA CTTTGACGAT ACCATGACCC ATGGTGGATA 
    CTCCGACCAC ATGGTGTGTG CTGAGGATTT CATCATCCGT ATTCCTGACA 
    ATCTCCCATT AGACGGTGCC GCACCACTAC TCTGCGCCGG GGTCACGGTC 
    TACTCCCCCA TGAAGTATCA CGGGCTCGAC AAGCCCGGTA TGCACATCGG 
    TGTGGTGGGA CTAGGCGGTT TGGGCCATGT AGCAGTGAAA TTTGCTAAGG 
    CTATGGGTAC TAAAGTTACG GTTATTAGTA CTTCGGAGCG TAAGAGAGAC 
    GAGGCCGTTA CTCGGCTTGG TGCGGATGCC TTCTTGGTGA GCCGTGACCC 
    GAAACAAATG AAGGATGCAA TGGGGACTAT GGATGGTATC ATTGATACCG 
    TATCTGCGAC CCATCCACTT CTTCCGCTGC TTGGTTTGCT TAAAAATAAG 
    GGAAAACTTG TTATGGTTGG TGCACCAGCA GAACCGCTCG AGCTTCCTGT 
    TTTTCCTCTC ATCTTTGGGC GGAAGATGGT GGTGGGTAGT ATGGTAGGAG 
    GTATAAAGGA GACGCAAGAG ATGGTGGATT TGGCTGGAAA ACACAACATC 
    ACGGCGGATA TTGAGCTCAT CTCTGCGGAT TATGTCAACA CCGCCATGGA 
    ACGGCTTGCA AAGGCTGACG TTAAGTACCG ATTTGTGATT GATGTTGCCA 
    ACACGATGAA GCCAACTCCT TAACTAGAAA GCTTAAGAAT TGAATATCCC 
    CAAAGCTTTT TTCATGTTTT TGCTTGTTTG TTTGATGTTG TTTGCTGGCG 
    ACTTTGTGTG TAGTATTACC ACACTGCATG TACTTTATCA GTTGAATAAA 
    CTTGAATATT GTATTTAATA AGCTATCTAC ATTAGATTTT GGGGAAGTTT 
    GATTAAAATT TATTCCTAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT4G37980.1 [+] show detail - elicitor-activated gene 3-1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily GroES-like 5.8e-48
    superfamily NAD(P)-binding domain 2.1e-42
    PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0
    HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 3.9e-123
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 3.9e-123
    HMMPfam Alcohol dehydrogenase GroES-like 2e-27
    HMMPfam Alcohol dehydrogenase, zinc-binding 7.4e-23
    HMMSmart Polyketide synthase, enoylreductase 5.4e-05
    Gene3D no description 3.3e-57

    See the detailed result >

    AT4G37980.1

    Model type
    Protein coding
    Short Description
    elicitor-activated gene 3-1
    Computational Description
    elicitor-activated gene 3-1 (ELI3-1); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to bacterium, plant-type hypersensitive response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: elicitor-activated gene 3-2 (TAIR:AT4G37990.1); Has 39128 Blast hits to 39104 proteins in 3053 species: Archae - 813; Bacteria - 26065; Metazoa - 1241; Fungi - 2911; Plants - 3099; Viruses - 3; Other Eukaryotes - 4996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR