F28121

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F28121

Determination of introduced cDNA(s)

  • RAFL04-09-D07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-D07 - Resource: pda02284

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-09-D07 - full reading
    AAGCTTTTTT TACAAAAGAC GTACACGTCT CTCTCTCTCA CTCCCTCTTT 
    AAGATCAGAA GCTCATTTCT TCGATACGAT CAACCATTAG AGATGGGTTC
    GGCGAACAAC GAGTACGAGT TTCTGAGTGA GATTGGGCTG ACTTCTCACA
    ACTTGGGATC TTACGTTGCT GGCAAATGGC AAGCCAACGG ACCTCTTGTT
    TCAACTCTCA ATCCTGCTAA CAATCAGCCA ATTGCTCAAG TTGTGGAAGC
    TTCTCTAGAG GATTACGAGC AAGGTTTGAA AGCTTGCGAG GAAGCAGCTA
    AAATATGGAT GCAGGTTACG GCTCCTAAGA GAGGTGATAT CGTCAGACAG
    ATTGGGGATG CACTAAGATC CAAACTTGAC TATCTTGGTC GTCTTCTTTC
    TCTTGAAATG GGAAAGATCC TTGCTGAAGG TATTGGAGAA GTTCAGGAAG
    TAATTGACAT GTGTGATTTT GCTGTTGGTT TGAGCCGACA ACTCAATGGA
    TCGGTTATAC CTTCAGAACG CCCTAACCAC ATGATGTTGG AGATGTGGAA
    TCCTCTTGGC ATTGTTGGTG TTATCACAGC GTTTAATTTT CCCTGTGCAG
    TTCTTGGTTG GAATGCTTGT ATTGCTCTTG TCTGTGGAAA CTGTGTAGTC
    TGGAAAGGTG CTCCAACTAC ACCGTTAATA ACTATCGCAA TGACCAAGCT
    AGTAGCTGAA GTTTTAGAGA AAAACAACTT ACCCGGTGCC ATTTTTACGG
    CCATGTGTGG TGGTGCTGAA ATTGGTGAAG CAATAGCCAA AGACACACGC
    ATTCCCTTAG TATCCTTTAC TGGAAGCTCC AGGGTGGGCT CAATGGTACA
    ACAAACAGTG AATGCGAGAT CTGGGAAAAC TTTGCTTGAG TTGAGTGGAA
    ACAATGCAAT CATAGTCATG GACGATGCTG ATATACAGTT AGCGGCTCGA
    TCTGTTCTAT TCGCTGCGGT TGGAACTGCT GGTCAACGTT GCACAACTTG
    CCGTAGGCTG CTTTTGCATG AGAGTGTCTA TGACAAAGTA CTCGAGCAAC
    TGCTTACCTC ATACAAACAA GTCAAAATCG GCAATCCTCT TGAGAAAGGG
    ACATTGTTAG GACCATTACA TACTCCTGAA TCAAAAAAGA ACTTTGAGAA
    AGGAATTGAA GTCATCAAAT CCCAGGGTGG TAAAATACTA ACGGGAGGTA
    AAGCAGTCGA AGGTGAAGGA AACTTTGTGG AGCCTACGAT AATCGAGATA
    TCAGCAGATG CTGCTGTCGT CAAAGAAGAG CTATTTGCTC CGGTTCTATA
    TGTTCTAAAG TTTAAGTCAT TTGGAGAGGC TGTTGCGATA AACAACTCGG
    TTCCTCAAGG TCTAAGCAGC TCGATATTCA CTCGGAACCC TGAAAACATC
    TTCAGGTGGA TCGGACCACT GGGAAGTGAC TGTGGCATTG TGAATGTGAA
    CATACCGACG AATGGAGCTG AGATTGGTGG AGCTTTTGGA GGCGAGAAAG
    CGACTGGTGG TGGTCGTGAA GCTGGAAGCG ACTCATGGAA ACAGTACATG
    CGTCGATCGA CTTGTACCAT CAACTATGGA AACGAGTTAC CTCTAGCGCA
    AGGAATTAAC TTCGGTTAGA TTTTTCAGAG ATTTACTCGT TAATTAATAA
    TGTTATGTTG GTTCGATTTC GATACTTGTA TTGTATGCCT TGTTCTCTCC
    AAGCCTTTGA CTTAAGATGA TTACGCTTTT AATATATATA AAAAAATATT
    GAATAG

    Gene models with high sequence identity

    1. AT1G54100.1 [+] show detail - aldehyde dehydrogenase 7B4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Aldehyde/histidinol dehydrogenase 2.7e-141
    PatternScan Aldehyde dehydrogenase, conserved site 0
    Gene3D Aldehyde dehydrogenase, N-terminal 5.6e-79
    HMMPfam Aldehyde dehydrogenase 2.1e-129
    HMMPanther ALDEHYDE DEHYDROGENASE 7 0
    HMMPanther Aldehyde dehydrogenase 0

    See the detailed result >

    AT1G54100.1

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 7B4
    Curator Summary
    Aldehyde dehydrogenase
    Computational Description
    aldehyde dehydrogenase 7B4 (ALDH7B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 5F1 (TAIR:AT1G79440.1); Has 58805 Blast hits to 58641 proteins in 2995 species: Archae - 475; Bacteria - 35443; Metazoa - 2491; Fungi - 2112; Plants - 1217; Viruses - 0; Other Eukaryotes - 17067 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR