F28124

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28124

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28124

Determination of introduced cDNA(s)

  • RAFL05-10-H10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-H10 - Resource: pda00949

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-H10 - full reading 
    GTAAAAATTA CACAAAGGAT AGTGTCTGCA AATATCTAAA TGAAAACACT 
    TAATTCCAAA ATGAGAAATC AAGTGGGTTT TGCCTAGCTA ATTGTATAAA 
    TAGTAACACA ATCATAATCT CTTCTTCCAT CAGGTCTTCT TCATAATATA 
    TTTCTTCTCT AATAATTGAA AGCAAAAGAA AACAGTTTTT TTTTTTAGAA 
    AGGTAAAGAA ATGGAGGAAA CAAAGGAGAG AAAGATAGTA GTAGCAGTAG 
    ACGAAAGCGA AGAGAGCATG GAAGCTCTGT CATGGAGTCT TGACAATCTT 
    TTTCCATATG GTTCCAATAA TACACTCATC CTCCTCTACG TCAAGCCCCC 
    TCTTCCCGTT TACTCTTCCC TCGATGCCGC AGGGTTTATA GTGACAGGAG 
    ACCCGGTTGC AGCTTTGAAG AAGTATGAAT ACGAGCTCGT GGAATCGGTC 
    ATGGCTCGGT CTCGAACCGT GTACCAAGAT TATGAGTCTG ATATTAATAT 
    AGAGAGACGA GTTGGAAGAG GAGATGCTAA GGAAGTTATA TGCAACGCAG 
    TTCAGAAACT TAGAGTTGAT ATGTTAGTAA TGGGCACTCA TGACTATGGC 
    TTCTTCAAAA GGGCTTTGCT AGGGAGTGTG AGCGAGTATT GCGCCAAACG 
    AGTCAAGTGT CCTGTGGTTA TCGTCAAGAA GCAAGCTCAA GATAATTAAG 
    CTCATATGAT TGCATTGTGT ATATGTTTCG AAAGAACTGG TGTAACACTT 
    GAATCAATCT TCGTATGCGA TAATAAAATA CATAACGGTT TAAACGAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G62550.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Universal stress protein A 1.3e-15
    FPrintScan Universal stress protein A 1.3e-15
    FPrintScan Universal stress protein A 1.3e-15
    HMMPfam UspA 1.8e-30
    superfamily Adenine nucleotide alpha hydrolases-like 1.3e-28
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 3.4e-27

    See the detailed result >

    AT3G62550.1

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Computational Description
    Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT1G09740.1); Has 3064 Blast hits to 3005 proteins in 732 species: Archae - 271; Bacteria - 1876; Metazoa - 108; Fungi - 22; Plants - 723; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR