F28141

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others) present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28141

Determination of introduced cDNA(s)

RAFL06-83-B22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-B22 - Resource: pda03844

full reading [+] show sequence

GGAGACCAAG AGTGCGAAGT AGCTCTCTGT CTTTCGAAGC AGAAGTGAGA 
CTTTGACGAC AACAGTGGGA GGAACTATGA GTTCTTGTGT TGTGACGACA 
AGCTGTTTCT ATACAATTTC AGATTCTAGT ATACGTTTGA AATCCCCCAA 
GCTCCTCAAT CTGAGTAACC AGCAGAGAAG ACGCTCTCTT AGGTCTCGAG 
GTGGTTTAAA GGTTGAAGCT TACTACGGTC TAAAGACACC TCCTTATCCA 
CTTGATGCTT TGGAGCCGTA TATGAGTAGA AGAACACTAG AAGTGCATTG 
GGGAAAACAC CATCGAGGTT ATGTAGATAA TCTGAATAAA CAGTTAGGGA 
AAGATGATAG ACTCTATGGA TACACCATGG AAGAGCTTAT CAAGGCTACA 
TACAACAACG GGAATCCTTT ACCCGAGTTC AACAACGCTG CACAGGTCTA 
TAACCATGAT TTCTTCTGGG AGTCGATGCA ACCTGGTGGT GGAGACACGC 
CTCAAAAGGG TGTTCTTGAG CAGATTGATA AGGATTTTGG TTCTTTCACA 
AATTTTAGAG AAAAGTTCAC TAATGCAGCT CTTACTCAGT TTGGTTCTGG 
ATGGGTCTGG CTTGTCTTAA AGAGGGAAGA GAGAAGGCTT GAGGTGGTCA 
AAACCTCAAA CGCCATTAAC CCACTCGTGT GGGACGATAT TCCAATCATC 
TGCGTGGATG TGTGGGAGCA CTCTTATTAT CTGGACTACA AGAACGACAG 
GGCTAAGTAT ATAAACACAT TTCTGAACCA CTTGGTGTCG TGGAACGCTG 
CCATGAGTCG GATGGCCCGT GCAGAAGCGT TTGTGAATCT TGGTGAACCC 
AACATCCCAA TCGCTTAAGC TAAACACAAC TCCTTGGAAA CTTGGGCAGT 
CTCATTTTTG CAAACAGAGG TCTCAAGTCC CAAGTCCCAA CCAACAAAAC 
AAGAGTTGCT TTCTGAATGT GACCCATCTT TTTGTTCTGT GTAATTTAGC 
GACAGTTTTC TCTTCTTTTG CCTTTTGAGA GACTCTCTAG CTTTAAGATC 
ATCAGTGAGC CCTGTATGGT GACAGTAATG TTAGTGACGC AATTAACCCT 
TATTAAGTTA TAATAAAACG AAGGCTGGCT CACGTGACCC GCACGTGACT 
GAGAGTATCA AAAAAAAAAA AAAAA

Gene models with high sequence identity

AT5G23310.1 [+] show detail - Fe superoxide dismutase 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Manganese/iron superoxide dismutase, C-terminal	2.2e-40
superfamily	Manganese/iron superoxide dismutase, N-terminal	5.8e-33
FPrintScan	Manganese/iron superoxide dismutase	1.4e-18
FPrintScan	Manganese/iron superoxide dismutase	1.4e-18
FPrintScan	Manganese/iron superoxide dismutase	1.4e-18
FPrintScan	Manganese/iron superoxide dismutase	1.4e-18
FPrintScan	Manganese/iron superoxide dismutase	1.4e-18
HMMPanther	SUPEROXIDE DISMUTASE [FE]	3.9e-180
HMMPanther	Manganese/iron superoxide dismutase	3.9e-180
PatternScan	Manganese/iron superoxide dismutase, binding site	0
HMMPfam	Manganese/iron superoxide dismutase, C-terminal	3.7e-37
HMMPfam	Manganese/iron superoxide dismutase, N-terminal	7.3e-23

See the detailed result >

AT5G23310.1

Model type: Protein coding
Short Description: Fe superoxide dismutase 3
Curator Summary: Fe superoxide dismutase
Computational Description: Fe superoxide dismutase 3 (FSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: removal of superoxide radicals; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR