F28201

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	increased height (PATO:0000570) (Adult plant::Plant height::tall)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28201

Determination of introduced cDNA(s)

RAFL04-19-L07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-L07 - Resource: pda00620

full reading [+] show sequence

ACAGCTAACT ATTTATTCTT AGGAGATTAC GTAGACAGGG GCAAGCAGAG 
TTTGGAGACT ATTTGTCTTC TGCTTGCTTA CAAAATCAAA TACCCTGAGA 
ACTTTTTTCT TCTAAGAGGA AACCACGAAT GTGCTTCTAT TAACAGAATC 
TATGGATTCT ATGATGAATG TAAACGTCGA TTCAGTGTGA GACTCTGGAA 
AGTGTTTACA GATTCTTTTA ACTGTCTCCC TGTTGCTGCT GTTATAGACG 
ATAAGATATT ATGTATGCAC GGTGGCCTTT CTCCCGATTT GACCAACGTG 
GAACAGATTA AGAACATTAA GCGACCTACT GATGTTCCTG ACTCTGGTTT 
GCTCTGTGAT CTGCTTTGGT CTGATCCAAG CAAAGATGTC AAAGGTTGGG 
GGATGAATGA CCGTGGAGTC TCTTACACGT TTGGCCCTGA CAAAGTCGCG 
GAGTTTCTAA TAAAGAATGA TATGGATCTC ATCTGCCGTG CCCACCAGGT 
TGTAGAGGAT GGATATGAGT TTTTCGCCGA TAGACAGCTT GTTACGATAT 
TTTCTGCTCC CAACTACTGT GGTGAATTTG ACAATGCTGG TGCTATGATG 
AGTGTTGATG AAAGTTTAAT GTGCTCTTTC CAAATTCTTA AGCCTGCTGA 
TCGAAAGCCC CGGTTCTTAT GAAGTAAAGA GTTGAAACCT CGCGGGAAAG 
AAGAGGAAAA AGGCGATACG AAAGCGGGAG AGACATTTGA AGCTCCCTGA 
GACTTTGTCC GGAGGCCTTG CAAAGGCAAA AAAACATAAT TTACATGTTA 
TATTATCTTA TTTGAACTCT TGCCATTTCT TTTCTCAAAA CACTTTATGT 
TCTTATGATC TTCTCCTCTG ACTCTATATA GACAGTAAAA AAAGTCTGCA 
AATTTTCATT CTT

Gene models with high sequence identity

AT5G59160.1 [+] show detail - type one serine/threonine protein phosphatase 2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	3e-100
superfamily	Metallo-dependent phosphatases	3.9e-104
HMMSmart	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3.9e-114
HMMPanther	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3e-172
HMMPfam	Metallophosphoesterase	7e-36
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	4.8e-80
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	4.8e-80
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	4.8e-80
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	4.8e-80
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	4.8e-80
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	4.8e-80
PatternScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	0

See the detailed result >

AT5G59160.1

Model type: Protein coding
Short Description: type one serine/threonine protein phosphatase 2
Curator Summary: Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.
Computational Description: type one serine/threonine protein phosphatase 2 (TOPP2); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 5 (TAIR:AT3G46820.1); Has 7217 Blast hits to 7021 proteins in 626 species: Archae - 78; Bacteria - 572; Metazoa - 2410; Fungi - 1415; Plants - 989; Viruses - 12; Other Eukaryotes - 1741 (source: NCBI BLink).
Link: InterPro Scan - TAIR