F28201

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28201

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28201

Determination of introduced cDNA(s)

  • RAFL04-19-L07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-L07 - Resource: pda00620

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-L07 - full reading
    ACAGCTAACT ATTTATTCTT AGGAGATTAC GTAGACAGGG GCAAGCAGAG 
    TTTGGAGACT ATTTGTCTTC TGCTTGCTTA CAAAATCAAA TACCCTGAGA
    ACTTTTTTCT TCTAAGAGGA AACCACGAAT GTGCTTCTAT TAACAGAATC
    TATGGATTCT ATGATGAATG TAAACGTCGA TTCAGTGTGA GACTCTGGAA
    AGTGTTTACA GATTCTTTTA ACTGTCTCCC TGTTGCTGCT GTTATAGACG
    ATAAGATATT ATGTATGCAC GGTGGCCTTT CTCCCGATTT GACCAACGTG
    GAACAGATTA AGAACATTAA GCGACCTACT GATGTTCCTG ACTCTGGTTT
    GCTCTGTGAT CTGCTTTGGT CTGATCCAAG CAAAGATGTC AAAGGTTGGG
    GGATGAATGA CCGTGGAGTC TCTTACACGT TTGGCCCTGA CAAAGTCGCG
    GAGTTTCTAA TAAAGAATGA TATGGATCTC ATCTGCCGTG CCCACCAGGT
    TGTAGAGGAT GGATATGAGT TTTTCGCCGA TAGACAGCTT GTTACGATAT
    TTTCTGCTCC CAACTACTGT GGTGAATTTG ACAATGCTGG TGCTATGATG
    AGTGTTGATG AAAGTTTAAT GTGCTCTTTC CAAATTCTTA AGCCTGCTGA
    TCGAAAGCCC CGGTTCTTAT GAAGTAAAGA GTTGAAACCT CGCGGGAAAG
    AAGAGGAAAA AGGCGATACG AAAGCGGGAG AGACATTTGA AGCTCCCTGA
    GACTTTGTCC GGAGGCCTTG CAAAGGCAAA AAAACATAAT TTACATGTTA
    TATTATCTTA TTTGAACTCT TGCCATTTCT TTTCTCAAAA CACTTTATGT
    TCTTATGATC TTCTCCTCTG ACTCTATATA GACAGTAAAA AAAGTCTGCA
    AATTTTCATT CTT

    Gene models with high sequence identity

    1. AT5G59160.1 [+] show detail - type one serine/threonine protein phosphatase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3e-100
    superfamily Metallo-dependent phosphatases 3.9e-104
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-114
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3e-172
    HMMPfam Metallophosphoesterase 7e-36
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.8e-80
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0

    See the detailed result >

    AT5G59160.1

    Model type
    Protein coding
    Short Description
    type one serine/threonine protein phosphatase 2
    Curator Summary
    Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.
    Computational Description
    type one serine/threonine protein phosphatase 2 (TOPP2); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 5 (TAIR:AT3G46820.1); Has 7217 Blast hits to 7021 proteins in 626 species: Archae - 78; Bacteria - 572; Metazoa - 2410; Fungi - 1415; Plants - 989; Viruses - 12; Other Eukaryotes - 1741 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR