F28204

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28204

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28204

Determination of introduced cDNA(s)

  • RAFL04-18-N22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-18-N22 - Resource: pda02362

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-18-N22 - full reading 
    TCTCTCTCTC TCAGACGAGA TTTCCTCTTC ATCTCAAGAG AAATGGCTGA 
    ATCCAAGGTA GTGGTTCCAG AGTCTGTGCT AAAGAAGATC AAGAGGCAAG 
    AGGAATGGGC ATTGGCCAAG AAAGATGAAG CTGTAGCTGC TAAGAAGAAG 
    AGTGTTGAGG CCCGCAAGCT TATCTTCAAG AGAGCTGAGC AGTATGCCAA 
    AGAATACGCT GAGAAGGATA ACGAGTTGAT CCGATTGAAG CGGGAGGCTA 
    AGTTGAAAGG AGGTTTCTAC GTTGACCCTG AGGCTAAGTT GCTCTTTATC 
    ATTCGTATCC GTGGTATCAA TGCCATTGAC CCAAAAACCA AGAAGATTCT 
    GCAGCTCCTG CGTTTGAGAC AGATCTTCAA TGGTGTGTTT CTTAAGGTGA 
    ACAAGGCAAC AGTAAACATG CTGCGCCGAG TTGAACCATA CGTGACTTAC 
    GGATACCCAA ACTTGAAGAG CGTTAAGGAA CTGATCTACA AAAGAGGTTA 
    TGGAAAGCTG AACCACCAGA GGATAGCACT TACTGACAAC TCCATTGTGG 
    ATCAGGCTCT CGGAAAGCAT GGGATCATCT GCGTTGAGGA TCTCATCCAC 
    GAGATCATGA CTGTTGGACC TCACTTCAAG GAAGCCAACA ACTTCCTGTG 
    GCCATTCCAA TTGAAGGCAC CACTCGGTGG CCTTAAGAAG AAGAGAAACC 
    ACTACGTCGA AGGTGGTGAT GCTGGAAACA GGGAGAATTT CATCAACGAG 
    CTTGTCAGGA GAATGAATTG ATGAAAGCTT CCTTCTTTAT CTTTGCAAAT 
    TTCAAAGATT TTGGGACCGA GTTTTTTTTT TTTTGTTCAA GTTATCAGAG 
    ACTTGTGATC TTTTATCCGA GATAGGCTTT TTATGACT

    Gene models with high sequence identity

    1. AT2G44120.1 [+] show detail - Ribosomal protein L30/L7 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L30, conserved site 0
    superfamily Ribosomal protein L30, ferredoxin-like fold domain 1.8e-64
    Gene3D no description 9.9e-27
    HMMTigr Ribosomal protein L7, eukaryotic 1.3e-138
    Coil coiled-coil 0
    HMMPfam Ribosomal protein L30, N-terminal 3.6e-24
    HMMPfam Ribosomal protein L30p/L7e, conserved region 4.4e-21
    HMMPanther 60S RIBOSOMAL PROTEIN L7 5.2e-130

    See the detailed result >

    AT2G44120.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L30/L7 family protein
    Computational Description
    Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 1303 Blast hits to 1301 proteins in 392 species: Archae - 217; Bacteria - 1; Metazoa - 455; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR