F28215

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28215

Determination of introduced cDNA(s)

  • RAFL06-72-K12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-72-K12 - Resource: pda03399

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-72-K12 - full reading
    ACATTCACAC ACACCCACAT TTTACATTCA ACTCTTATAC AATATGCCCA 
    TGTTAATGGC GACACGTATC GATATAATCC AAAAGCTTAA TGTATATCCA
    AGGTTTCAAA ACCATGACAA GAAGAAACTA ATCACTCTCT CCAATTTGGA
    CCGTCAGTGT CCTTTACTCA TGTACTCTGT CTTCTTCTAC AAGAATACCA
    CAACTCGTGA CTTTGACTCC GTCTTCTCCA ACCTGAAGCT CGGGCTGGAG
    GAGACTATGT CTGTGTGGTA TCCCGCGGCA GGGAGACTGG GTTTGGACGG
    AGGTGGCTGC AAGCTCAACA TCCGGTGTAA CGATGGTGGC GCAGTCATGG
    TGGAGGCGGT GGCGACAGGT GTCAAGTTGT CCGAGCTTGG TGATTTGACT
    CAGTACAATG AGTTTTATGA GAATTTAGTT TACAAGCCTT CCTTGGATGG
    TGATTTCTCT GTGATGCCTC TTGTTGTTGC TCAGGTGACA AGATTTGCAT
    GTGGAGGTTA CTCAATTGGA ATCGGTACAA GCCACTCTCT ATTTGATGGA
    ATCTCAGCTT ACGAATTCAT TCACGCGTGG GCCTCCAACT CTCACATTCA
    CAACAAATCC AACAGCAAGA TTACTAATAA AAAGGAAGAT GTGGTCATCA
    AACCGGTTCA TGATCGACGA AATCTACTGG TTAACCGGGA TGCTGTCCGA
    GAAACCAATG CTGCAGCCAT TTGTCATCTG TACCAGTTGA TCAAACAGGC
    GATGATGACC TATCAGGAGC AAAACCGTAA CTTAGAGTTA CCAGACTCTG
    GTTTTGTGAT CAAAACGTTC GAGCTTAATG GCGATGCGAT AGAAAGCATG
    AAGAAGAAAT CACTAGAAGG GTTCATGTGC TCCTCCTTTG AGTTTCTTGC
    TGCTCATTTG TGGAAGGCAA GAACAAGGGC TTTAGGGTTG AGGAGAGACG
    CCATGGTGTG TTTACAATTC GCAGTGGACA TAAGGAAAAG AACGGAGACA
    CCGCTGCCAG AAGGGTTTTC CGGCAACGCA TACGTGCTTG CCTCGGTGGC
    ATCCACCGCC AGAGAATTAC TTGAAGAGCT AACACTCGAG TCAATAGTCA
    ACAAGATCAG AGAAGCCAAG AAATCAATTG ACCAAGGTTA CATAAACTCT
    TACATGGAAG CACTCGGAGG TAGTAATGAC GGAAATCTCC CTCCTCTCAA
    AGAGCTAACC CTAATCTCCG ACTGGACAAA AATGCCATTT CACAATGTTG
    GCTTTGGCAA CGGCGGCGAG CCAGCGGATT ACATGGCCCC ACTGTGTCCA
    CCGGTGCCAC AAGTTGCTTA TTTCATGAAG AACCCTAAAG ATGCCAAAGG
    TGTTCTTGTG AGGATTGGCT TGGACCCACG AGATGTTAAT GGCTTTTCAA
    ATCATTTCCT TGATTGCTAA TATATTAGCT GGTGATAATT AATTAATTAG
    TAGAATCTTT GTGGTAGTAT ACAGTATGAT AATGGCTCCT CTATATGCAT
    GCGTGTGCGC TAAAGACACT TTATTGTAAT TGGGTTATGA TGATGTATAA
    TTTAATGACA TCTCTCTGCT TTGC

    Gene models with high sequence identity

    1. AT4G31910.1 [+] show detail - HXXXD-type acyl-transferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transferase 1.3e-67
    Gene3D no description 7.1e-39
    Gene3D no description 1.1e-36

    See the detailed result >

    AT4G31910.1

    Model type
    Protein coding
    Short Description
    HXXXD-type acyl-transferase family protein
    Computational Description
    HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G41040.1); Has 2584 Blast hits to 2554 proteins in 136 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 40; Plants - 2539; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR