F28229

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28229

Determination of introduced cDNA(s)

  • RAFL05-17-D14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-D14 - Resource: pda17108

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-D14 - full reading 
    CCGATAACTA GAAAAACAAT GAAGCTCTCT CAAGTCTTCT ACATTATCTT 
    CTTATTCTTC CTTGTCTCAC AAGTAAAGTC AACGTCCGAT ATGATCGACC 
    AAACCTGCAA ATCTTGCGCA GCCAAATCCA CGATCTTCGA TTACAACTTC 
    TGTGTCTCCT CTCTCAACAA CTCTCCAATA GCTCTTCCTT CTCCGACCAA 
    TCTTTCTTCT CTTGCCCTTG TTCCAATGCT CCAAGCTCTC GACAACGCCA 
    CCGCAACAGC TTCCACCATT CAACAGCTTC TTATAAGCGA CGACGACGGT 
    AGTTTCCGCA GTGCTTGCCT CCGTGACTGC CTCGAGCTTT ACGAGGACGC 
    GACGGATAGA TTGGAGGAGG CAGTGAGAGT TTTTATTACA AGGAAAGAGT 
    TAGGTACGGT TAATGTGATG GTAAGCGCCG CCATGGAATC CGCCGTGACT 
    TGTGAGAATG GATTCAGGGA AAGAGACGAC GGTGACGGTG GTGGTGGAGG 
    TGTGACGACG TGGACGTCTC CTATTGGTGA TGAGAATCAC AAATTGTTTG 
    AGTTTGGTCA GATTGCTCTT TGTATATTCA ATATGCTCTC TTCTTCTGTC 
    ACATCTCTAT CTTTCTAAAT CGTTTTCAAT CTTTTAGCTG TTTAGGCTTT 
    TGTTTGTATC GAAAACGACA AAAGGATAAA GATAAATGTA TTAATGTTCA 
    CTAAAAAAAA AA

    Gene models with high sequence identity

    1. AT5G38610.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pectinesterase inhibitor 3.3e-29
    HMMPfam Pectinesterase inhibitor 5.7e-30
    superfamily Pectinesterase inhibitor 1.7e-23
    HMMSmart Pectinesterase inhibitor 6.3e-36
    Gene3D Pectinesterase inhibitor 7e-27

    See the detailed result >

    AT5G38610.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily protein
    Computational Description
    Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G46940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR