F28232

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28232

Determination of introduced cDNA(s)

  • RAFL09-19-N06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-N06 - Resource: pda05538

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-N06 - full reading 
    CTCGCCCACT CTTCTCTTCC GCACCGCTTT TGAAAAACGG CGACGCATTG 
    TCTCCATTCA ATCGCCGGAA AATTAGAAGA GAAGATGGCG GCGCCGGAAG 
    CTCCGGTTAA GTACGTCGGA ATATGTAAGG ATTCCGCCGC TTTCAAGCTT 
    ATGAAATCGA TGGGTTGGGA AGAAGGAGAA GGACTTGGTA AAGATAAGCA 
    AGGTATCAAA GGTTATGTGA GAGTTACGAA CAAACAAGAT ACATCTGGTG 
    TTGGTCTTGA TAAGCCAAAT CCATGGGCAT TTGATACAAC TCAGTTCGAT 
    AACATTCTCA AGAAATTGAA AGTGCAAGCT GCTCCTACCA AGACTAGCAA 
    GAATGATGAT GATTCAGATA AGGAAGATGA AAGTGAAGAT GATGCTGTCA 
    AATCTGAGCC TGCCAAGTTG AAGACCGTTG CTAAAGTCAC TCGTCCACAA 
    GGAAGGTATA AACGTAGAGA GAAAGGGAAG CTTGTCAATT CATACTCGTC 
    TAAAGATCTT GAAGGAATAC TGGTTAAGCG AACTGAGGAT CCTTCTCCTG 
    CAGTTTGTGA CATAGCCGAT TCTATGGATA TTGAAATTAT ATCTGAGGAC 
    CAAGATGCTA GTATTAAAGA ACAGAAAATT GAAGAACCTT CTTCGAACTG 
    GTGGGGATTT AAATCCGGGT TTGTCTCGGG TGGTCTTCTG GGGGCCAAGT 
    CGGGCAAAAA GAAATTAAAA GCTAGCGAGA GAAAAATGTT TAGTGAGAAT 
    GATCAAGAGA ATCTTTACAA CATGGTTCAG GATAAAGCCA CAGCGGGAAA 
    ACAAGGACTG GGTATCAAAG ACCGGCCAAA GAAAATAGCT GGTGTTCGTT 
    ACGAAGGGAA GAAAACCTCT TTTGATAACA GTGATGATGA TGATGATGAT 
    GATGATGATG ATGACGAAGA AGACGAAGAG GAAGATGAAG ACGAGAGTGA 
    AGCAGATGAT GATGACAAGG ACTCTGTAAT TGAAAGTTCT CTTCCCGCGA 
    AAAGGAAGCA CGATGAAATC ATTGAACCCA AAATCAAGTT AAAGAACCTG 
    TGCAAGCAGA TTGTTAAAAA GGATGCTGGT AAAGGTGGAT TCATGAAGCT 
    GAAACAGCTA AAATCTCTGA TCGATGAACA AGCACCATCA GTTCTTTCAG 
    AGTTTTCTTC AAGAAAAGAT GCTATTGCTT ACTTGAAACT TAAGCTGGAG 
    CGAAGTGGCA AGTTTGTTGT GGAGGGAAAG AAGATTAGTC TTGTATCAAG 
    CAAGAAGTGA GCGAGAATTT TTGGTTGGAA TTATCATTAT ACCTGCATAG 
    GAAAGTGGAG ATTAGGACAA GTTTTGTTAC TAAATCATCA CAATGCCATA 
    TGTAAACAAA GATCATACTT CAGTTTGGAA AATTTTGATT TGATTGTAAT 
    CTATTTTTAC ATTCTATTAG AGTTTGCATA AAACTTCACC CTAATAAGTT 
    ACTCTCTTAT ATTTGGAACC

    Gene models with high sequence identity

    1. AT1G63980.1 [+] show detail - D111/G-patch domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart D111/G-patch 1.4e-11
    HMMPfam D111/G-patch 2.9e-14
    HMMPanther PIN2-INTERACTING PROTEIN X1 (PINX1) (LIVER- R 8e-11
    HMMPanther G PATCH DOMAIN CONTAINING PROTEIN 8e-11
    ProfileScan D111/G-patch 14.528

    See the detailed result >

    AT1G63980.1

    Model type
    Protein coding
    Short Description
    D111/G-patch domain-containing protein
    Computational Description
    D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 18077 Blast hits to 9113 proteins in 508 species: Archae - 9; Bacteria - 1331; Metazoa - 6165; Fungi - 2709; Plants - 1373; Viruses - 248; Other Eukaryotes - 6242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR