F28310

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28310

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28310

Determination of introduced cDNA(s)

  • RAFL09-69-G05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-G05 - Resource: pda06652

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-G05 - full reading
    ATCAAACCAT AACTTCCAAA TCTCAACAGA ACCAAAAACA AAAGAAACCT 
    ATATTAAAGA AGAAACAAAA AATGGTGGCT TTTGCAACAG AGAAGAAGCA
    AGATCTGAAT CTATTGTCTA AAATCGCCTC CGGTGACGGT CACGGCGAGA
    ATTCCTCTTA TTTCGATGGT TGGAAAGCTT ATGAAGAAAA CCCATTTCAC
    CCAATTGATA GACCTGACGG AGTTATTCAA ATGGGTCTCG CTGAAAATCA
    GCTTTGTGGA GATTTGATGC GTAAATGGGT TTTAAAACAT CCAGAAGCTT
    CGATTTGTAC ATCAGAAGGT GTGAATCAAT TCAGTGACAT TGCCATTTTT
    CAAGATTATC ATGGCTTGCC TGAATTCAGA CAAGCTGTAG CGAAATTTAT
    GGAGAAGACT AGAAATAACA AAGTTAAGTT TGATCCTGAC CGGATTGTTA
    TGAGCGGCGG CGCAACCGGA GCACACGAGA CGGTTGCTTT CTGTTTAGCT
    AATCCCGGCG ATGGTTTCTT AGTTCCAACC CCTTATTATC CAGGGTTTGA
    TAGAGATTTG AGATGGAGAA CCGGAGTGAA TCTTGTACCG GTTACTTGTC
    ATAGCTCTAA TGGGTTCAAG ATTACGGTGG AAGCCTTGGA AGCTGCTTAC
    GAAAACGCGA GAAAATCGAA TATTCCGGTT AAGGGTTTAC TTGTAACCAA
    TCCTTCAAAC CCGCTTGGTA CGACGTTAGA CCGGGAATGT TTGAAGTCTC
    TTGTTAACTT CACTAATGAC AAAGGGATTC ATCTTATTGC TGATGAGATT
    TATGCTGCTA CTACTTTTGG TCAATCCGAG TTCATAAGTG TTGCGGAAGT
    AATCGAGGAG ATCGAAGATT GTAACCGCGA TTTGATACAT ATTGTGTATA
    GTCTATCTAA AGATATGGGT CTGCCTGGTT TAAGAGTTGG TATAGTATAC
    TCTTACAATG ACAGGGTGGT TCAGATCGCA AGGAAAATGT CGAGTTTCGG
    TCTTGTTTCG TCACAAACGC AGCATTTGAT CGCTAAAATG TTATCCGATG
    AAGAGTTTGT AGACGAGTTT ATCCGCGAGA GCAAATTGCG GTTAGCTGCA
    AGGCACGCTG AGATAACCAC CGGTTTAGAT GGTTTAGGGA TTGGTTGGTT
    AAAGGCCAAA GCCGGTTTGT TCTTGTGGAT GGATTTAAGA AATCTTTTGA
    AGACAGCAAC GTTTGATTCG GAAACCGAAC TATGGCGTGT GATTGTTCAC
    CAAGTGAAGC TCAACGTGTC TCCAGGCGGT TCGTTCCATT GCCATGAACC
    GGGATGGTTT AGAGTATGTT TTGCGAATAT GGACCATAAG ACGATGGAGA
    CAGCTCTAGA GAGGATTAGA GTGTTCACTA GCCAACTTGA GGAGGAGACT
    AAACCGATGG CTGCAACAAC TATGATGGCT AAAAAGAAGA AGAAGTGTTG
    GCAGAGTAAC CTCAGGTTAA GCTTTAGTGA CACGAGGCGG TTCGATGATG
    GCTTCTTCTC GCCTCATTCG CCTGTGCCGC CTTCTCCGCT AGTCCGTGCA
    CAGACTTAAG ACCGTCTCAT ATTTTGACTA GACCAGTCGT CGTTAATTAA
    AAAGTCAATT CTTTAGATTG ATTTTGACAC ATTTATCTGA TTAAATCAAA
    TGTATAGCTA CGACTATCAA GTTGATTTTT TCTTTCTTTT AATTTTGTAT
    CTCATGTAAT TTTAACCGGG TGAATAATAT GAATTTGAAA TCAGAATTTG
    TTT

    Gene models with high sequence identity

    1. AT4G11280.1 [+] show detail - 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ACC SYNTHASE 1.1e-216
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 1.1e-216
    HMMPfam Aminotransferase, class I/II 1.3e-103
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 4.6e-72
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 0.00000024
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    superfamily Pyridoxal phosphate-dependent transferase, major domain 9.4e-107

    See the detailed result >

    AT4G11280.1

    Model type
    Protein coding
    Short Description
    1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
    Curator Summary
    encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family
    Computational Description
    1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (ACS6); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR