F28310

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28310

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28310

Determination of introduced cDNA(s)

  • RAFL09-69-G05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-G05 - Resource: pda06652

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-G05 - full reading 
    ATCAAACCAT AACTTCCAAA TCTCAACAGA ACCAAAAACA AAAGAAACCT 
    ATATTAAAGA AGAAACAAAA AATGGTGGCT TTTGCAACAG AGAAGAAGCA 
    AGATCTGAAT CTATTGTCTA AAATCGCCTC CGGTGACGGT CACGGCGAGA 
    ATTCCTCTTA TTTCGATGGT TGGAAAGCTT ATGAAGAAAA CCCATTTCAC 
    CCAATTGATA GACCTGACGG AGTTATTCAA ATGGGTCTCG CTGAAAATCA 
    GCTTTGTGGA GATTTGATGC GTAAATGGGT TTTAAAACAT CCAGAAGCTT 
    CGATTTGTAC ATCAGAAGGT GTGAATCAAT TCAGTGACAT TGCCATTTTT 
    CAAGATTATC ATGGCTTGCC TGAATTCAGA CAAGCTGTAG CGAAATTTAT 
    GGAGAAGACT AGAAATAACA AAGTTAAGTT TGATCCTGAC CGGATTGTTA 
    TGAGCGGCGG CGCAACCGGA GCACACGAGA CGGTTGCTTT CTGTTTAGCT 
    AATCCCGGCG ATGGTTTCTT AGTTCCAACC CCTTATTATC CAGGGTTTGA 
    TAGAGATTTG AGATGGAGAA CCGGAGTGAA TCTTGTACCG GTTACTTGTC 
    ATAGCTCTAA TGGGTTCAAG ATTACGGTGG AAGCCTTGGA AGCTGCTTAC 
    GAAAACGCGA GAAAATCGAA TATTCCGGTT AAGGGTTTAC TTGTAACCAA 
    TCCTTCAAAC CCGCTTGGTA CGACGTTAGA CCGGGAATGT TTGAAGTCTC 
    TTGTTAACTT CACTAATGAC AAAGGGATTC ATCTTATTGC TGATGAGATT 
    TATGCTGCTA CTACTTTTGG TCAATCCGAG TTCATAAGTG TTGCGGAAGT 
    AATCGAGGAG ATCGAAGATT GTAACCGCGA TTTGATACAT ATTGTGTATA 
    GTCTATCTAA AGATATGGGT CTGCCTGGTT TAAGAGTTGG TATAGTATAC 
    TCTTACAATG ACAGGGTGGT TCAGATCGCA AGGAAAATGT CGAGTTTCGG 
    TCTTGTTTCG TCACAAACGC AGCATTTGAT CGCTAAAATG TTATCCGATG 
    AAGAGTTTGT AGACGAGTTT ATCCGCGAGA GCAAATTGCG GTTAGCTGCA 
    AGGCACGCTG AGATAACCAC CGGTTTAGAT GGTTTAGGGA TTGGTTGGTT 
    AAAGGCCAAA GCCGGTTTGT TCTTGTGGAT GGATTTAAGA AATCTTTTGA 
    AGACAGCAAC GTTTGATTCG GAAACCGAAC TATGGCGTGT GATTGTTCAC 
    CAAGTGAAGC TCAACGTGTC TCCAGGCGGT TCGTTCCATT GCCATGAACC 
    GGGATGGTTT AGAGTATGTT TTGCGAATAT GGACCATAAG ACGATGGAGA 
    CAGCTCTAGA GAGGATTAGA GTGTTCACTA GCCAACTTGA GGAGGAGACT 
    AAACCGATGG CTGCAACAAC TATGATGGCT AAAAAGAAGA AGAAGTGTTG 
    GCAGAGTAAC CTCAGGTTAA GCTTTAGTGA CACGAGGCGG TTCGATGATG 
    GCTTCTTCTC GCCTCATTCG CCTGTGCCGC CTTCTCCGCT AGTCCGTGCA 
    CAGACTTAAG ACCGTCTCAT ATTTTGACTA GACCAGTCGT CGTTAATTAA 
    AAAGTCAATT CTTTAGATTG ATTTTGACAC ATTTATCTGA TTAAATCAAA 
    TGTATAGCTA CGACTATCAA GTTGATTTTT TCTTTCTTTT AATTTTGTAT 
    CTCATGTAAT TTTAACCGGG TGAATAATAT GAATTTGAAA TCAGAATTTG 
    TTT

    Gene models with high sequence identity

    1. AT4G11280.1 [+] show detail - 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ACC SYNTHASE 1.1e-216
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 1.1e-216
    HMMPfam Aminotransferase, class I/II 1.3e-103
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 4.6e-72
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 2.4e-07
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    superfamily Pyridoxal phosphate-dependent transferase, major domain 9.4e-107

    See the detailed result >

    AT4G11280.1

    Model type
    Protein coding
    Short Description
    1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
    Curator Summary
    encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family
    Computational Description
    1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (ACS6); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR