F28318

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28318

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28318

Determination of introduced cDNA(s)

  • RAFL06-10-F05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-F05 - Resource: pda17173

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-F05 - full reading
    TGAAAAACCA AAACTCTTAT CTTCGGTACA GAGCAAATCA CAGCTCCCGA 
    TGGCCGCCAC GTCATCATCA CCGCCGTGTA ACATCTCCGC GTCCTCCCTC
    CTCCTCCGTC AACCTTCTCG CTCAATCCTT AAAGTGTTCG GTTTATTACC
    ACCTGTAAGT AGGAATAACC GTAAACTCGG CCGGTTAACG GTGACCCGGT
    CTAATCTGGC GCAGGATTTT CTTGGTGACT TCGGAGCTCG TGACCCTTAC
    CCGGAGGAGA TAGCGAGTCA ATTCGGAGAT AAAGTGTTGG GATGCCAAAG
    CACTGAGCAC AAGATTTTGA TACCAAACGC ATCTGTTTTG TCTCTCTCCC
    AGCTTCAGTG TTCCCCTGTT TCGTCTTCAC AGCCTCCTTT GTCCGGCGAT
    GATGCCAGAA CTCTCCTCCA CAAGGTTTTG GGATGGAGTA TAGTGGATAA
    TGAAGCGGGT GGTCTGAAAA TAAGGTGTAT GTGGAAAGTG AGGGATTTTG
    GGTGCGGTGT TGAACTCATA AACAGGATCC ATAAGGTTGC TGAAGCTTCT
    GGTCATTACC CTTCTCTTCA CTTGGAAAGT CCTACCCAAG TTCGAGCTGA
    ACTATTTACC TCTTCTATCG GAGGGTTGAG CATGAATGAT TTCATAATGG
    CGGCTAAAAT AGATGATATC AAGACTTCTG ATCTTTCCCC TAGGAAAAGA
    GCTTGGGCGT GATCTTCTTT TCATTATTTT GGAACATTTT TGTTTGATAG
    TATGTAATGT ATGTGATGTA TTCTAAATTG TGTGTGATCG GTCTACATGT
    CGAGTTATAT AGAAAGCATT GTCATAACCG CATAAGAGAT ATCACGCAAC
    ATGTCTTTGA GATTCATTCA TCAATCAAAA GAAGAAAGAA CACCAAAAAA
    AAAA

    Gene models with high sequence identity

    1. AT5G51110.1 [+] show detail - Transcriptional coactivator/pterin dehydratase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Transcriptional coactivator/pterin dehydratase 6.7e-20
    HMMPanther Transcriptional coactivator/pterin dehydratase 8.2e-60
    Gene3D Transcriptional coactivator/pterin dehydratase 0.00000000000057
    HMMPfam Transcriptional coactivator/pterin dehydratase 8.5e-21

    See the detailed result >

    AT5G51110.1

    Model type
    Protein coding
    Short Description
    Transcriptional coactivator/pterin dehydratase
    Computational Description
    Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1); Has 1849 Blast hits to 1849 proteins in 364 species: Archae - 43; Bacteria - 697; Metazoa - 0; Fungi - 2; Plants - 93; Viruses - 0; Other Eukaryotes - 1014 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR