F28320

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28320

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28320

Determination of introduced cDNA(s)

  • RAFL06-87-L23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-L23 - Resource: pda12267

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-87-L23 - full reading
    AACTCTATAT ATATCGCCCA GTCTTTTTAT CTCTCTGACT CTCTCTCTAT 
    GGACGAGGCT ACCGGAGAAA CAGAAACTCA AGATTTCATG AACGTCGAAT
    CCTTCTCTCA GCTTCCTTTC ATTCGCCGTC CTAAAGATAA GAACCCTAAA
    CCCATTCGTG TCTTCGGAAA AGATTTCACC GGCAGAGATT TCTCTATTAC
    TACCGGTCAA GAAGACTACA CCGATCCTTA CCAGACCAAA AACAAAGAAG
    AAGAAGAGGA AGAAGACCAA ACCGGAGACA ACAGTACGGA CAATAATAGC
    ATCAGCCACA ACAGGAGATT CGAGTGTCAC TATTGCTTTA GAAATTTTCC
    TACTTCACAA GCCCTAGGTG GACACCAAAA CGCTCACAAA CGCGAACGTC
    AGCTTGCCAA ACGCGGTGTT TCCTCTTACT TTTATCATCC TGACAATAAC
    CCTTACAGTT ACCGTCATTA CCCGTCGTGG ACCAATGGTC CGTTAACCGC
    GGCTAGGTCC TATGGAGGAT TTTCTTCTGG TCCTAAGCCG TCGGGGTATT
    ATACACGACC CAGCTATGGG AGTCAGTTAG GACTATGGCG TCTACCGCCT
    CGCGTTCAAG GCGTTTATAA CTCAAACGCA GCGTTTACTA GTAATGGCTC
    TTCTTCTTCT TCTAATTCGA CTTTACCGTT GTTGACCCGT TCTCAAACTC
    AACTATCATC GCAAGTGGGT GGCTCCGCTG CTCAGAACAG AATGTCATCG
    TACGGTTACG GATTGAGCCC TAACGTGCAA GATCATGTGA GTCTCGATCT
    TCATCTTTAA AGATTTGAAA ACAAAATAAA ACTCTTATTG AGTGTTATGT
    AACTTAGTGC AAGAAAAAAC AACCTAAGTT ATTGAATATT ACGTAATCTT
    TAACGATTAG ACTTCTTATT ATCTATACCT ATTCCCTTAT TGAATGTTTT
    GTAAGGTAAG AAACGGCACG ATGTGTAAGA TTCACGGCAT CGATCTTTCT
    TTTTTTACCC ATACGTGCTT GAATGAAGGA AGGGAATTTA C

    Gene models with high sequence identity

    1. AT3G58070.1 [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, C2H2-type 10.99
    PatternScan Zinc finger, C2H2-type 0
    superfamily C2H2 and C2HC zinc fingers 3.9e-06

    See the detailed result >

    AT3G58070.1

    Model type
    Protein coding
    Short Description
    C2H2 and C2HC zinc fingers superfamily protein
    Curator Summary
    Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile
    Computational Description
    GLABROUS INFLORESCENCE STEMS (GIS); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, trichome branching, response to gibberellin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 8 (TAIR:AT2G41940.1); Has 936 Blast hits to 936 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR