F28320

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others) abnormal (PATO:0000460) (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28320

Determination of introduced cDNA(s)

RAFL06-87-L23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-L23 - Resource: pda12267

full reading [+] show sequence

AACTCTATAT ATATCGCCCA GTCTTTTTAT CTCTCTGACT CTCTCTCTAT 
GGACGAGGCT ACCGGAGAAA CAGAAACTCA AGATTTCATG AACGTCGAAT 
CCTTCTCTCA GCTTCCTTTC ATTCGCCGTC CTAAAGATAA GAACCCTAAA 
CCCATTCGTG TCTTCGGAAA AGATTTCACC GGCAGAGATT TCTCTATTAC 
TACCGGTCAA GAAGACTACA CCGATCCTTA CCAGACCAAA AACAAAGAAG 
AAGAAGAGGA AGAAGACCAA ACCGGAGACA ACAGTACGGA CAATAATAGC 
ATCAGCCACA ACAGGAGATT CGAGTGTCAC TATTGCTTTA GAAATTTTCC 
TACTTCACAA GCCCTAGGTG GACACCAAAA CGCTCACAAA CGCGAACGTC 
AGCTTGCCAA ACGCGGTGTT TCCTCTTACT TTTATCATCC TGACAATAAC 
CCTTACAGTT ACCGTCATTA CCCGTCGTGG ACCAATGGTC CGTTAACCGC 
GGCTAGGTCC TATGGAGGAT TTTCTTCTGG TCCTAAGCCG TCGGGGTATT 
ATACACGACC CAGCTATGGG AGTCAGTTAG GACTATGGCG TCTACCGCCT 
CGCGTTCAAG GCGTTTATAA CTCAAACGCA GCGTTTACTA GTAATGGCTC 
TTCTTCTTCT TCTAATTCGA CTTTACCGTT GTTGACCCGT TCTCAAACTC 
AACTATCATC GCAAGTGGGT GGCTCCGCTG CTCAGAACAG AATGTCATCG 
TACGGTTACG GATTGAGCCC TAACGTGCAA GATCATGTGA GTCTCGATCT 
TCATCTTTAA AGATTTGAAA ACAAAATAAA ACTCTTATTG AGTGTTATGT 
AACTTAGTGC AAGAAAAAAC AACCTAAGTT ATTGAATATT ACGTAATCTT 
TAACGATTAG ACTTCTTATT ATCTATACCT ATTCCCTTAT TGAATGTTTT 
GTAAGGTAAG AAACGGCACG ATGTGTAAGA TTCACGGCAT CGATCTTTCT 
TTTTTTACCC ATACGTGCTT GAATGAAGGA AGGGAATTTA C

Gene models with high sequence identity

AT3G58070.1 [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Zinc finger, C2H2-type	10.99
PatternScan	Zinc finger, C2H2-type	0
superfamily	C2H2 and C2HC zinc fingers	3.9e-06

See the detailed result >

AT3G58070.1

Model type: Protein coding
Short Description: C2H2 and C2HC zinc fingers superfamily protein
Curator Summary: Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile
Computational Description: GLABROUS INFLORESCENCE STEMS (GIS); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, trichome branching, response to gibberellin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 8 (TAIR:AT2G41940.1); Has 936 Blast hits to 936 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR