F28331

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28331

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28331

Determination of introduced cDNA(s)

  • RAFL19-70-D10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-70-D10 - Resource: pda11490

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-70-D10 - full reading 
    ATCGGAATCC CTAGAACACT CGATTTCAGC AAAATCAAAT CGGATTCAGT 
    GATCAAAAGT CAATTTGGTC GAGAAGAAAT TGAGCGTTGA AGATGACGGA 
    GGCGATGATA GGAAATAAGC CAGGAATGGC GAGTGTGAAG GATATGCCGC 
    TGCTTCAGGA TGGTCCGCCA CCGGGTGGGT TCGCACCGGT CCGATATGCC 
    CGCCGGATAT CCAATACGGG TCCTAGTGCA ATGGCCATGT TCCTTGCCGT 
    TTCTGGTGCC TTTGCTTGGG GAATGTACCA GGTCGGCCAG GGAAACAAAA 
    TCCGCAGGTA AGAACGACTT GTAATAGCTC GTTCACATTT CAATTTTTCC 
    TCTAAAATTC GAGATCGCCT TGGTAAAATT AGTGTTGTGG AGTGATTGAT 
    GACCATAGTA ATGTAGTGAA GGATACATTT TGGTTAATAA TTGTTGAAAC 
    TTGAGTATGT TTATCGTAGG AATTGGTTAA TATTATTAAC CTATGGAAAC 
    ATAGGCTTGT TGAATCACTG TTATGTATTC TGTTATTAGT ATTCCCCGAC 
    ATTTTGGTTG AAGCTTAATC AGCATGAGTT TAGCCTTAAA CGAATATAAA 
    GTTCGTCAAC AATTTGTAAA CTCTTAAAGC CACAATTGCA AAGATGTGAG 
    AATCTGTTAT GATGAAAGCA ATTATCTAGT TGCATGTTTT GATAGTAGTT 
    ATCGGGATAC TGTTTCTATG TAGATAGATT GTTTTAGTAT TATATCTGGC 
    TTGATCATTA ACTTCTTATG CATTTACAAT GGTCCTAAAC AAGTCTGATT 
    TGATATCAGT AAGTATCAAG ATTAATGCTC TTATCAAGAT TGATGTGATG 
    TTTAGGGCAT TGAAGGAAGA GAAATATGCT GCTCGTAGAA CAATACTTCC 
    CATTCTTCAA GCAGAAGAAG ATGAAAGGTA AACCATATTC TCAAATTTAA 
    GTCAATGTGC CTGCAGCAAC CTTCAGATAG CAATCTTGTT TCAATCCCCG 
    TTTTGCATTC TAGGTTTGTG TCTGAGTGGA AAAAGTATCT GGAATATGAG 
    GCTGATGTAA TGAAAGATGT TCCGGGATGG AAAGTTGGCG AGAATGTGTA 
    CAATTCTGGT CGCTGGATGC CTCCGGCCAC TGGGGAACTC CGTCCTGATG 
    TGTGGTGATT TCCTAGTTTC TCTCAAATGC ATATGATGAT GATGAATGAT 
    GTTTCGCTGA GGATTGATAT GTTCTTGTTA TATCTTTTTT TCTTCGGGTA 
    ATAAGAGAAT GATTCAACAG ACAGTATTCT TCTTGTATTG GTTTTCTCTT 
    AAGTGTTTCA ATCGTAATAT GAGGCAAAAA CAGTTTCAT

    Gene models with high sequence identity

    1. AT1G04630.1 [+] show detail - GRIM-19 protein
      E-value: 0; Score: 99.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GRIM-19 4.8e-17
    HMMPfam GRIM-19 2e-16
    HMMPanther GRIM-19 9.7e-10
    HMMPanther GRIM-19 1.4e-35

    See the detailed result >

    AT1G04630.1

    Model type
    Protein coding
    Short Description
    GRIM-19 protein
    Computational Description
    maternal effect embryo arrest 4 (MEE4); CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: GRIM-19 protein (TAIR:AT2G33220.1); Has 332 Blast hits to 332 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 83; Plants - 65; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR