F28336

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28336

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28336

Determination of introduced cDNA(s)

  • RAFL06-78-M02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-78-M02 - Resource: pda03746

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-78-M02 - full reading
    AAAATCAGAA TTAGCATCTG TTTAGATTGG ATCTTGATCA CTGGCGGGCG 
    AAGTTGGAGA AGATTGATGG AAAGCCGACC GGGAGTTTTG GTCGTCGGAT
    CCTCTGGCGT CGGCAAGCGC ACCCTCCTCT CTCGATTGCT CTCTGTGGAA
    TTTGAGGATT CATCGGAGTC ATCATCTCAA ACAGAAGTTC ATGGCTGGAC
    GATTAACACT AAGTATTACA CTGCGGATGT TTCTGTATGT ATATCACATA
    TTTGCGATGA ATACTCTCTA CCCAATCTCC CTAACTCACA TCCACTGGTG
    GCGTTAGTTA TGGTCTTCGA CTTGAGTGAG CTGTCAACCC TTGTTGCTCT
    TCAAGACTGG GTTTCTCATA CTGACATCAA CAGTTTTGAT ATATTGTTGT
    GCATTGGTAA CAAAGTAGAT CGTGTCCCTC ATCACCTTGC TCATGATGAA
    TATAGACGGC GCCTTTTGAA GGCATCAGAC CCCTCTAGAG ATCTGTATTC
    GGACATTGAT GACTTTGGGA TCTCCGAAAC TGAAGGAAGC AGCTTGTTGG
    GAAGTGAAGA TGCATCACTA GATATCAGGG GAGCATGTCT TGAGTGGTGC
    TCTGAGAATA ACATTGAGTT CATTGAGGCT TGTGCCTCTA ATCCTGATTT
    TGACAAGTGT TTATCAGTCG ATGGGGATTC TCAAGGGGTT GAACGTCTAT
    TTGGTGCTCT TTCGGCTCAT ATGTGGCCTG GGATGATTCT GAAATCTGGT
    GATAGGATAA ATGAACCTGT GTTACCTCAA GGGGAAGAGT TGTCAGAAGA
    AGAATCTGAA TATGAATTGG AGTATGAAGT GCTATCAGCA GGCTCAGGTG
    ATCCATGGGA TAATATTGAA GAAAGATGGG TTTCTGCAAG TGAAACGCAT
    TCACATGCCG ATGCTGGCGG ATCCACTTCA CAGGAAAACC TCCATGTAGA
    AAATAGTATG GTGAAACCGA ATAAAGTTGA TGAAGAGCTG CTGCCGTCAG
    GGTCAAGGTT AGAGCTGCAA AATGACACTG ACAGAGCAAT AGTAACAGAT
    GAAAAACCTT TGGGCACAGA AAATGAAAAA TGTTACGAGT TTGAAGATGT
    GGAACAGTTG ATGTCAGAAA TAGGAAACAT CCGGGACAAC TTGCGATTGA
    TGCCTGATTT CCAGAGGAGG GAAATAGCTG CAAATTTAGC GATGAAAATG
    GCTTCCATGT TTGGAGGTGA CACTGATGAC GAGGAAGAAC CTGAGTGAGT
    CTGTTTATAT CAGATATTGT AAAAGATCAG CGTGAGCTAC GGTTTAATCC
    TTTCTTTATA CAATCTTTAT CAAAGTCCGT GTCTTGTTTT TTGATAGATT
    CTGGCAGTAA TAGTCAGTTG CACGATGTAA TACTTATCTG GGCCGACCTG
    TTATGTATCG CTTTACTTTT TCTTCAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G65960.1 [+] show detail - GTP binding
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Alpha-/gamma-adaptin-binding protein p34 1e-30
    HMMPfam MIRO-like 4.4e-07
    superfamily P-loop containing nucleoside triphosphate hyd 7.3e-08
    HMMPanther RAS-RELATED GTPASE 0.00069

    See the detailed result >

    AT5G65960.1

    Model type
    Protein coding
    Short Description
    GTP binding
    Computational Description
    GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial Rho-like (InterPro:IPR013684), Alpha/gamma-adaptin-binding protein p34 (InterPro:IPR019341); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR