F28336

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28336

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28336

Determination of introduced cDNA(s)

RAFL06-78-M02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-78-M02 - Resource: pda03746

full reading [+] show sequence

AAAATCAGAA TTAGCATCTG TTTAGATTGG ATCTTGATCA CTGGCGGGCG 
AAGTTGGAGA AGATTGATGG AAAGCCGACC GGGAGTTTTG GTCGTCGGAT 
CCTCTGGCGT CGGCAAGCGC ACCCTCCTCT CTCGATTGCT CTCTGTGGAA 
TTTGAGGATT CATCGGAGTC ATCATCTCAA ACAGAAGTTC ATGGCTGGAC 
GATTAACACT AAGTATTACA CTGCGGATGT TTCTGTATGT ATATCACATA 
TTTGCGATGA ATACTCTCTA CCCAATCTCC CTAACTCACA TCCACTGGTG 
GCGTTAGTTA TGGTCTTCGA CTTGAGTGAG CTGTCAACCC TTGTTGCTCT 
TCAAGACTGG GTTTCTCATA CTGACATCAA CAGTTTTGAT ATATTGTTGT 
GCATTGGTAA CAAAGTAGAT CGTGTCCCTC ATCACCTTGC TCATGATGAA 
TATAGACGGC GCCTTTTGAA GGCATCAGAC CCCTCTAGAG ATCTGTATTC 
GGACATTGAT GACTTTGGGA TCTCCGAAAC TGAAGGAAGC AGCTTGTTGG 
GAAGTGAAGA TGCATCACTA GATATCAGGG GAGCATGTCT TGAGTGGTGC 
TCTGAGAATA ACATTGAGTT CATTGAGGCT TGTGCCTCTA ATCCTGATTT 
TGACAAGTGT TTATCAGTCG ATGGGGATTC TCAAGGGGTT GAACGTCTAT 
TTGGTGCTCT TTCGGCTCAT ATGTGGCCTG GGATGATTCT GAAATCTGGT 
GATAGGATAA ATGAACCTGT GTTACCTCAA GGGGAAGAGT TGTCAGAAGA 
AGAATCTGAA TATGAATTGG AGTATGAAGT GCTATCAGCA GGCTCAGGTG 
ATCCATGGGA TAATATTGAA GAAAGATGGG TTTCTGCAAG TGAAACGCAT 
TCACATGCCG ATGCTGGCGG ATCCACTTCA CAGGAAAACC TCCATGTAGA 
AAATAGTATG GTGAAACCGA ATAAAGTTGA TGAAGAGCTG CTGCCGTCAG 
GGTCAAGGTT AGAGCTGCAA AATGACACTG ACAGAGCAAT AGTAACAGAT 
GAAAAACCTT TGGGCACAGA AAATGAAAAA TGTTACGAGT TTGAAGATGT 
GGAACAGTTG ATGTCAGAAA TAGGAAACAT CCGGGACAAC TTGCGATTGA 
TGCCTGATTT CCAGAGGAGG GAAATAGCTG CAAATTTAGC GATGAAAATG 
GCTTCCATGT TTGGAGGTGA CACTGATGAC GAGGAAGAAC CTGAGTGAGT 
CTGTTTATAT CAGATATTGT AAAAGATCAG CGTGAGCTAC GGTTTAATCC 
TTTCTTTATA CAATCTTTAT CAAAGTCCGT GTCTTGTTTT TTGATAGATT 
CTGGCAGTAA TAGTCAGTTG CACGATGTAA TACTTATCTG GGCCGACCTG 
TTATGTATCG CTTTACTTTT TCTTCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

AT5G65960.1 [+] show detail - GTP binding
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Alpha-/gamma-adaptin-binding protein p34	1e-30
HMMPfam	MIRO-like	4.4e-07
superfamily	P-loop containing nucleoside triphosphate hyd	7.3e-08
HMMPanther	RAS-RELATED GTPASE	0.00069

See the detailed result >

AT5G65960.1

Model type: Protein coding
Short Description: GTP binding
Computational Description: GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial Rho-like (InterPro:IPR013684), Alpha/gamma-adaptin-binding protein p34 (InterPro:IPR019341); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR